Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4124 ATGGAGACTCGCGCTTCAAGGAAGAGGGCCGCCGCCGCCGCCGCCGCTGTTGCCGCCACCACACCGGTCCAGATTGATACTCAGCCTCTCAAGAAGCAGCGCGTTGTGTTGGGTGAACTCACCAATCTGTCGAATCTGATCTTCCCGCTTCCTGCAAATTTGATTCCGCAGAAACAGAAACTGCAACCTCGCAAGAATCCTGGCTTGAAGAAACAACCTATAACCCTCCCTTTGGATGTTAAGGTTGAGAAGTTTGATGACCCACATGGTGGCAGCGAGTGTTATGAACCCAGCATCCTCAACTACCTTCGCGAAATGGAGATGCAGAAAAAGCGGAGACCAATGGTTGATTACATTGAGGAGGTTCAGAGGGAGGTTACAGAGAACATGAGAGGGATATTGGTGGATTGGCTTGTGGAAGTTGCAGAGGAGTACAAGCTTCTCTCTGAATCACTGTTTCTCTCTGTTTCCTATGTTGATAGGTTTCTATCCATTAACCCTGTCAAAAAGGGGAGGCTTCAATTGCTGGGTGTGACTTCCATGCTCGTTGCATCGAAGTATGAAGAAATTGACCCACCAAATGTTCGACAGTTTTGCTCAATTACTGATTACACATACAACAAGGCAGAGGTTGTAGAGATGGAAGCTGATATCCTCAGGTACCTAAATTTTGAAATGGGGAACCCAACTGCAATCACATTTCTTAAGAGGTTTACTGAGATTGATTCTAAGAATCAGAAAACACCAAATTTGCAGATTGAATTTCTAAGCAATTATCTTGCTGAGCTGAGTTTGATGGATTATGAATGTATAAGATTCTTGCCTTCTGTTATTGCTGCATCAGCTATATTTCTTGCCAGATTTATTCTCTCCCCTGATGACCATCCTTGGACTCCATCCCTGCAAGAATACACTGGTTATCAGGCAATTGAGTTGAAAGCATGTGTTCTCATCCTGCATGACTTATATTTAGCAAGAAGGTGTGCATCCTTAAGAGCTGTTAGGCAGAAATACAGGCAGCACAAGTTCAAATATGTGGCAAACTTTCCTTCCCCACCAGAAGTACCGAAGTTTTACTTTGATCCTGTGATTCAGCTGGATTGA 1104 0.4447 METRASRKRAAAAAAAVAATTPVQIDTQPLKKQRVVLGELTNLSNLIFPLPANLIPQKQKLQPRKNPGLKKQPITLPLDVKVEKFDDPHGGSECYEPSILNYLREMEMQKKRRPMVDYIEEVQREVTENMRGILVDWLVEVAEEYKLLSESLFLSVSYVDRFLSINPVKKGRLQLLGVTSMLVASKYEEIDPPNVRQFCSITDYTYNKAEVVEMEADILRYLNFEMGNPTAITFLKRFTEIDSKNQKTPNLQIEFLSNYLAELSLMDYECIRFLPSVIAASAIFLARFILSPDDHPWTPSLQEYTGYQAIELKACVLILHDLYLARRCASLRAVRQKYRQHKFKYVANFPSPPEVPKFYFDPVIQLD* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4124 367 Gene3D - 112 227 - -
Lja1g4124 367 ProSitePatterns Cyclins signature. 131 162 IPR006671 -
Lja1g4124 367 PANTHER CYCLINS 24 363 IPR039361 -
Lja1g4124 367 Pfam Cyclin, N-terminal domain 99 226 IPR006671 -
Lja1g4124 367 SMART Cyclin_C_2 229 352 IPR004367 -
Lja1g4124 367 PANTHER CYCLIN-A3-1-RELATED 24 363 - -
Lja1g4124 367 CDD CYCLIN 130 219 IPR013763 -
Lja1g4124 367 Gene3D - 99 348 - -
Lja1g4124 367 SUPERFAMILY Cyclin-like 94 226 IPR036915 -
Lja1g4124 367 SMART cyclin_7 233 321 IPR013763 -
Lja1g4124 367 SMART cyclin_7 136 220 IPR013763 -
Lja1g4124 367 SUPERFAMILY Cyclin-like 229 353 IPR036915 -
Lja1g4124 367 Pfam Cyclin, C-terminal domain 229 351 IPR004367 -
Lja1g4124 367 CDD CYCLIN 229 320 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4124 Lja-Chr1 52296386 52298420 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4124 3 363 Core Cell Cycle Gene Families AT5G43080 54.571 3.70e-132 380
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4124 1 52296386 52298420 Lja1g4124 1 52296386 52298420 ECH
Lja5g3107 5 60748803 60751582 Lja1g4124 1 52296386 52298420 PCT