Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4106 ATGGCTATGGAAGCTCTTAAATCACCAACCACCGCCGCTCCAACCTTCACTCCCTTCCAGGAACCGAACCACAGCTACATGGTCGACGCACCGTGGGCGAAGAGAAAGCGTTCCAAGCGTTCTCGCACGGACAGCCATCACAACCACGCTTCCTGCACGGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCAGCACCGCCGTAACACCCAAGCTCACTCTGTCTCGTCCGGCACCGGTAACCGCTGAAAAGCTCAGTTACAAGTGCTCTGTCTGCGAAAAAACCTTCCCCTCTTACCAAGCCCTTGGCGGACACAAGGCCAGCCACCGGAAACTCGCCGGCGCCGCCGCTGAGGACCACTCCACCTCCTCCGCCGTGACCACCAGCTCTGCCTCCAACGGTGGAGGCAAGGTCCACCAGTGCTCCATCTGCCAGAAATCCTTCCCTACAGGACAGGCCTTGGGAGGACACAAGCGTTGCCACTATGAAGGCGGTGGTGGTGCTAGTAGCACCGCCACAGCCACCGCATCGGAAGGTGTGGGATCCACACACAGCCACCAGCGCAACTTCGATCTGAACCTGCCGGCTTTTCCGGACTTCTCCGCCAGCAAATTTTTCGTGGAAGAAGAGGTTTCCAGTCCCCTGCCTTCGAAGAAGCCACGTCTTTTGCCCAAGATTGAAATCCCTCATTATTATTAA 711 0.5767 MAMEALKSPTTAAPTFTPFQEPNHSYMVDAPWAKRKRSKRSRTDSHHNHASCTEEEYLALCLIMLARGSTAVTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKLAGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCHYEGGGGASSTATATASEGVGSTHSHQRNFDLNLPAFPDFSASKFFVEEEVSSPLPSKKPRLLPKIEIPHYY* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4106 236 PANTHER ZINC FINGER PROTEIN ZAT10 1 229 - -
Lja1g4106 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Lja1g4106 236 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Lja1g4106 236 MobiDBLite consensus disorder prediction 124 138 - -
Lja1g4106 236 MobiDBLite consensus disorder prediction 172 191 - -
Lja1g4106 236 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 229 IPR044653 GO:0003700
Lja1g4106 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Lja1g4106 236 Pfam C2H2-type zinc finger 142 166 - -
Lja1g4106 236 Pfam C2H2-type zinc finger 91 115 - -
Lja1g4106 236 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Lja1g4106 236 MobiDBLite consensus disorder prediction 1 49 - -
Lja1g4106 236 Gene3D Classic Zinc Finger 88 165 - -
Lja1g4106 236 SMART c2h2final6 91 113 IPR013087 -
Lja1g4106 236 SMART c2h2final6 143 165 IPR013087 -
Lja1g4106 236 SUPERFAMILY beta-beta-alpha zinc fingers 91 165 IPR036236 -
Lja1g4106 236 MobiDBLite consensus disorder prediction 168 191 - -
Lja1g4106 236 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4106 Lja-Chr1 52081387 52082486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4106 1 226 C2H2 Transcription Factor Family AT1G27730 54.274 1.06e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g4106 zf-C2H2_6 1.5e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4106 1 52081387 52082486 Lja5g0441 5 3874432 3875756 ECH
Lja1g4106 1 52081387 52082486 Lja1g4106 1 52081387 52082486 ECH
Lja5g3096 5 60620457 60621640 Lja1g4106 1 52081387 52082486 PCT