Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4101 ATGGGAAAACGTAATTCTCAACGGAAAGGTGCTGCTGCAGTGTTTGATACCGATGATGATAGTAGTGTGACTTCCTCATCAACTTCAAATTCTGATCTGGTCTCGGTGTCTGGTACCGAAGATGTGCAGTTAGAACAGGATTCATTGCTTGACCAAGCTCTCGATGCTCTAGATGAAAAAAGGGGTTCTACGAGGGAGAAAGCTTTCTTAGCCATCATTGACGCCTTCAAAACCAACTTGCAGCATCAGTTTGTGGAAAAGAAATTTGCCACCATATTACATCAATGTCTTGCTTCAATCAAAAAGGGACCCAAGAAGGCTTCTGCCACGGAGATAGCTTTCGCATCTCGTGCCATTGGTTGTTTGGCCTTGACTGTTGGTTGTGGTGATCATGCACGTGAGATATTCGAAGAATCGGTTCGTCCTTTGGATGAAGCACTTGTTTCTTCAAAAATATCAGCATTGCTGGAGTGCTTGGCTATAATCACCTTTGTTGGAGGGAATGATCAGGAAGAAACAGAGCGATCTTTGGATATATTGTGGCGAGTGATCCATCCCAAATTAGGTTCCAATGTAGTTGCAGCCAAACCTTCTGCTCCATTAATAACCGCTGTGGTGTCTTCCTGGTCTTTTCTCCTGTCTACTATGAGCAATTTGAAGCTGAATTCAAAATTTTGGCAAAATTCAATATCTTATTTATCTGGTCTTCTAGACAAGGAAGATAGGTCAGTACGAATTGCTGCTGGTGAAGCCCTGGCTCTAATTTTTGAGATTGGAGTTACTGAGAAGTTTTCCGCTGTGTCTAATGGTGCAAGTGATACAACTCAAGACGAGAGTAAACCTCAGGAAAGTTACATATTTTTACAAGGATTAAAAGGAAAGGTGATTAATCAATGCAAAAACCTGTCTGTGGAGGCTGGTGGAAAAGGTTCTGCTAAAAAAGATCTTAATACTCAAAGGAACCTGTTCAAAGATATTTTGGATTTTTTCGAGTATGGTTACTCTCCTGAAATTACTACAAAGATTGGTGGTGATTCGTTGCAGACATCGTCATGGTCGCAAATGATACAGTTGAACTATATCAAGCACTTCCTTGGAGGAGGATTCATCAAGCATATGCAGGAAAATGAATTCCTGCATGATGTCTTTAGTTTCACACCAAAGAAAAAGCATCTCAGTAACAACGAACACAGAATGTCTGGTGAGGAGAAGAGAATGTTCAAGTCTCCAAATTCGTTTTTGAACAAGGCTAGGACCCAATTACTCAATAAGCAGCGGTTAATGTCTGAGGGCAGAAACTTCGGTCACTACTCGGCCAGTATGGTTAACGAGGAGCAATGA 1341 0.4146 MGKRNSQRKGAAAVFDTDDDSSVTSSSTSNSDLVSVSGTEDVQLEQDSLLDQALDALDEKRGSTREKAFLAIIDAFKTNLQHQFVEKKFATILHQCLASIKKGPKKASATEIAFASRAIGCLALTVGCGDHAREIFEESVRPLDEALVSSKISALLECLAIITFVGGNDQEETERSLDILWRVIHPKLGSNVVAAKPSAPLITAVVSSWSFLLSTMSNLKLNSKFWQNSISYLSGLLDKEDRSVRIAAGEALALIFEIGVTEKFSAVSNGASDTTQDESKPQESYIFLQGLKGKVINQCKNLSVEAGGKGSAKKDLNTQRNLFKDILDFFEYGYSPEITTKIGGDSLQTSSWSQMIQLNYIKHFLGGGFIKHMQENEFLHDVFSFTPKKKHLSNNEHRMSGEEKRMFKSPNSFLNKARTQLLNKQRLMSEGRNFGHYSASMVNEEQ* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4101 446 Pfam Interferon-related protein conserved region 376 426 IPR006921 -
Lja1g4101 446 MobiDBLite consensus disorder prediction 18 39 - -
Lja1g4101 446 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 2-LIKE ISOFORM X1 1 439 - -
Lja1g4101 446 Pfam Interferon-related developmental regulator (IFRD) 25 331 IPR007701 -
Lja1g4101 446 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 1 439 IPR039777 -
Lja1g4101 446 MobiDBLite consensus disorder prediction 1 39 - -
Lja1g4101 446 SUPERFAMILY ARM repeat 34 280 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4101 Lja-Chr1 52034526 52038808 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3084 5 60493569 60500588 Lja1g4101 1 52034526 52038808 PCT