Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4100 ATGTTGTGTGCTTGCTCCGGGGAGCAGTTCAAGTTAGAAGAGCCGCCGCCGCGGTCGCCGGAGTCCCTTGCAACCAGGGATTTCTCCGCCAGTGGGCTATCTTCCAGGACTGCAGATTGGGATTCCAAATTCAGTGAAACCCAAGTTGAAGAAGCTGAAACTACTCTCAAAGAAGCCCTTTCCTTGAACTATGAGGAAGCTAGGGCTTTGCTGGGGAGGCTGGAATACCAAAGGGGAAACTATGATGCTTCCCTTCAAGTATTTCAAGGTATAGACATCAAGGGTTTGACCCCGAGGATGATCAATGTAATTGCTGAAAGAACTAAGCAAAGAAAGCCACGATCGAAGGCAGACGTCGTGATTCTTCCGAATGTGATGTCATTGCATTCTGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCATTATCGCTGGAGGAACTTGGACGATACGTTGATGCTGCAAAGGAGTGCGGAATAATTCTGGATACGGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTAGCGAAGATTGTAAGTTGCAAGAAATGTTCCATAGAGCATTGGAGTTGCTTCCAAGCCTATGGATCAAGGCAGGCTTTCTAGATGAAGCTGTCACTGCATACCGTCGTGCTCTGGTTAAGCCATGGAATTTGGAGCAACAAAGGTTGGCTGTTATTCAAAAAGATTTAGCTACAACCCTACTCTATGGTGGTGTTGAATTAAGCCTACCCTCTCGGTTCCAAGTGTGGGGTCAGAAAGCACCCAAGAGTAACATTGAAGAAGCTATACTTTTGCTATTAATAATCATGAGCAAGATGACAATGCAGGTAATAGAATGGGATGCTGAAATAATGGATCATCTTACATTTGCACTTTCAGTCACTGGGATGTTGGAGTTGTTGGCAGATCATGTAGAGCAAATCCTTCCAGGCACCTATAATCGAGTTGATAGATGGTACTTCCTTGCTCTGTGTTATAGTGCTGCAGGACACAACGAAACAGCATTGAACCTTTTGAGGAAGGCATGTAGTCGTTCTGAAGCAAAGCTTAGACCCCATTTTCATTCGTTTTTGTTAGGAGCAAAACTCTGTTCTCAGGATCCTTGCCACGCTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATCTAGCTAAGCACCGTAACAAGCATTTTTTGGGTCAAGGCCAGAAATTTCTAGGTGTTTGCTATGGAGCTGCAGCCAGAATTTCTGTACTGGATTGTGAAAGAAGTGTATTTCAAAGTGAGTCTTTGAACTTTCTAAACTGCGCTGCTGTAAGTGGAAATGGTGACCCGGAAGTTATATTCAGCCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTATGACAATATAATGATGTACTCAAACATGACTGTTGGAGGTTCAGGAAGAGGATGGCAGCTATTAGCACTCATCGTATCTGCACAGAAGCGACTTATGGATGCTGAAACTATAGTTGATTTTGCATTAGATGAGGCTGGGAGGAGGGATCAGCTAGAACTTCTACGATTGAAAGCAGTACTTCAAATTGCTCAGCAACAACCCAATCAAGCATTAGAGTCCTACAGAATCCTGCTAGCACTAATTCAAGCCAAAAAGGAGCTTTGGCTTCGGGATAAGGACTTTGATCAAGCAAAAGCATTCAGGCATGAGATACTAACAGAAAGGAAGTTTGAAATGGAAGCCTGGACAGATCTGGCTACCATTTATGCCGATATCGGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAAGCCCAGTTGATAGATTTTTTTTCTCCAAGAAGTTGGCACATTACAGGGGTGTTGCTTGAATCTCAATCATTATACAAAGAGGCCTTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCAGCATCATTTCAAGTGCAAAATTGTTGCTGAAACTGGGGATGCAATCACTTCCAATTGCAAGAAGCTTTTTGATGAATGCTTTGCGGATAGAACCGGAAAACCATGATGTGTGGTTCAACCTTGGATTGGTTTCAAAAAGCGAAGGTTCATTACAGCAAGCAGCAGATTACTTTCAAGCTGCATATGAACTAAAGCTTTCCGCTCCAGTGCAAAAATTTGAGTAA 2154 0.4304 MLCACSGEQFKLEEPPPRSPESLATRDFSASGLSSRTADWDSKFSETQVEEAETTLKEALSLNYEEARALLGRLEYQRGNYDASLQVFQGIDIKGLTPRMINVIAERTKQRKPRSKADVVILPNVMSLHSVSLLLEAILLKALSLEELGRYVDAAKECGIILDTVESALPNGMPEGISEDCKLQEMFHRALELLPSLWIKAGFLDEAVTAYRRALVKPWNLEQQRLAVIQKDLATTLLYGGVELSLPSRFQVWGQKAPKSNIEEAILLLLIIMSKMTMQVIEWDAEIMDHLTFALSVTGMLELLADHVEQILPGTYNRVDRWYFLALCYSAAGHNETALNLLRKACSRSEAKLRPHFHSFLLGAKLCSQDPCHAHEGINFSREVIDLAKHRNKHFLGQGQKFLGVCYGAAARISVLDCERSVFQSESLNFLNCAAVSGNGDPEVIFSLGLENAIQRNLDAAYDNIMMYSNMTVGGSGRGWQLLALIVSAQKRLMDAETIVDFALDEAGRRDQLELLRLKAVLQIAQQQPNQALESYRILLALIQAKKELWLRDKDFDQAKAFRHEILTERKFEMEAWTDLATIYADIGSFLDAKACVDKAQLIDFFSPRSWHITGVLLESQSLYKEAFVSFSVSLSIEPDYIPSIISSAKLLLKLGMQSLPIARSFLMNALRIEPENHDVWFNLGLVSKSEGSLQQAADYFQAAYELKLSAPVQKFE* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4100 717 Coils Coil 57 77 - -
Lja1g4100 717 SUPERFAMILY TPR-like 551 708 IPR011990 GO:0005515
Lja1g4100 717 PANTHER PROTEIN NPG1 1 716 IPR043376 -
Lja1g4100 717 MobiDBLite consensus disorder prediction 8 36 - -
Lja1g4100 717 SUPERFAMILY TPR-like 46 344 IPR011990 GO:0005515
Lja1g4100 717 Pfam Tetratricopeptide repeat 679 708 IPR019734 GO:0005515
Lja1g4100 717 Pfam Tetratricopeptide repeat 48 89 - -
Lja1g4100 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Lja1g4100 717 SUPERFAMILY TPR-like 200 603 IPR011990 GO:0005515
Lja1g4100 717 Gene3D Tetratricopeptide repeat domain 41 242 IPR011990 GO:0005515
Lja1g4100 717 Gene3D Tetratricopeptide repeat domain 546 710 IPR011990 GO:0005515
Lja1g4100 717 Gene3D Tetratricopeptide repeat domain 257 545 IPR011990 GO:0005515
Lja1g4100 717 PANTHER PROTEIN NPGR1 1 716 - -
Lja1g4100 717 SMART tpr_5 574 607 IPR019734 GO:0005515
Lja1g4100 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Lja1g4100 717 SMART tpr_5 319 352 IPR019734 GO:0005515
Lja1g4100 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Lja1g4100 717 SMART tpr_5 513 546 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4100 Lja-Chr1 52027129 52031024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4100 1 716 Calmodulin-binding Proteins AT1G27460 58.333 0.0 828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4100 1 52027129 52031024 Lja1g4100 1 52027129 52031024 ECH
Lja5g3083 5 60482944 60486650 Lja1g4100 1 52027129 52031024 PCT