Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4096 ATGGCATTTTCAGGAACAACCCAGAAGTGCATGGCTTGTGACAAAATAGTTTATCTGGTTGAAAAGTTGACTGCGGACAAACGAGTGTACCACAAAACTTGCTTCAGATGCCACCACTGCAAAGGAACCCTCAAGCTTAGCAACTATAATTCCTTTGAGGGAGTTCTTTACTGCAAGCCACATTTCGACCAACTGCTGAAAAGAACTGGTAGCCTTAACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACCAGTAATAATGAGGCAATCAAAGTCTCAAGTAAGTTTGGTGGAACCAGAGATAAATGTGCTGCTTGTGAGAAAACAGTGTATCCCATTGAAAAGGTTTCTGTGAATGGAACTTGTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGATGTGTTATTAGTCCTTCCAACTACATTGCACACGAGGCCAAACTCTACTGCAAGCACCACCATATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAGCTTGAAGGTGACCATGAGAAGAGTGATAAAATCAATGGTGAAGTAGTTGCTGCTGAGACATGA 576 0.4167 MAFSGTTQKCMACDKIVYLVEKLTADKRVYHKTCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLLKRTGSLNKSFEGTPKIAKPEKTSNNEAIKVSSKFGGTRDKCAACEKTVYPIEKVSVNGTCYHKSCFKCTHGGCVISPSNYIAHEAKLYCKHHHIQLIKEKGNLSQLEGDHEKSDKINGEVVAAET* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4096 191 CDD LIM2_SF3 107 167 - -
Lja1g4096 191 Gene3D Cysteine Rich Protein 4 74 - -
Lja1g4096 191 Gene3D Cysteine Rich Protein 102 171 - -
Lja1g4096 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 132 - -
Lja1g4096 191 Pfam LIM domain 10 63 IPR001781 -
Lja1g4096 191 Pfam LIM domain 107 161 IPR001781 -
Lja1g4096 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lja1g4096 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Lja1g4096 191 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Lja1g4096 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lja1g4096 191 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Lja1g4096 191 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 183 - -
Lja1g4096 191 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lja1g4096 191 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lja1g4096 191 SMART lim_4 9 61 IPR001781 -
Lja1g4096 191 SMART lim_4 106 158 IPR001781 -
Lja1g4096 191 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4096 Lja-Chr1 52007553 52011219 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lja1g4096 LIM 9.2e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4096 1 52007553 52011219 Lja1g4096 1 52007553 52011219 ECH
Lja5g3079 5 60458157 60460349 Lja1g4096 1 52007553 52011219 PCT