Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3953 ATGGTGAAGAATCATCAACATCCCACTAAATTTGTTTACTTTCTGATAATCTTTTATTCTTGGTCTCTAAGTTTCATCATGAACATGGGCATGGCACAAAGAAACGAGACTACAGTGGTGAAAGTTGGAGGTGTAATTGATCTTACAGGAATGGTTGGGAAGATGGGGTTGAGTTGCATCAACATGTCCCTCTCAGATTTCTATCATTCTCATTCTCATTACAACACTAGGATCCAATTCAGCTTCAGGGATTCTCATGGGGATGTTGTTACTGCTGCTGCACAAGCTTTGGAGCTCATACAAAATGAGCAAGTGCAAGCTATCCTTGGTCCTGTAACAACAATGGAAGCAAATTTCATGATCCGTTTAGGAGACAAAGCTCACGTTACCATCATAACCTTCTCAGCAACAAGCCCCTCTTTAGTATTGCTCAAAAGTCCTTATTTTTTCCAAATTGCACAGAAAGACACAGCTCAAGTGAATGCCATAACCTCCATGGTTCAAGCTTTTGGTTGGAAACAAGTGGTGCCCATTTATGTTGACAACAGCTTTGGTGAAGGACTCATCCCTGCCTTAACCATTTCTCTGCAACAAGCCTATATCAGAGTTCCCTATTGCAGTGCCATTTCTCCTTCAGCCACTGATGAAGTCATCACTCAAGAGCTCTACAAGTTGAGGACCATGCCAACTAGAGTCTTTGTTGTTCACATGTCACCGCGCCTTGGCTCTCGCCTCTTTGCCATTGCGAAGAGCATTGGAATGATGGAACAAGGCTATGTTTGGATTGTGACTGATGGCATTGCAAATTTGTTAAACTCTCTGAACTCTTCTGTGGTAGAATCTATGGAAGGAGTGCTAGGTGTTCGAACATATGTCCCAAAGACCAAGGAGCTTGATGGTTTTAAAGCTCGGTGGAAAAGACGGTTCCTTTTGGATAATCCAACACTTGTTGATGCGAATTTGAATGTTTTTGGAATGTGGGCATATGATGCTGCCACAGCATTGGCTATGGCTGTTGAGAAGGTTGGTGCCGCCAACTTTGGCTATAGCAACACTTCAAGAAATCTGCACGATCTTGAAGAGATTGGTGTCGCGCGAAGTGGTGAGAAGCTACGTGAGGCTCTGTCGAACACTAGATTCAGAGGTCTCAGTGGTGATTTCAATGTTGTTGGTGGAGAACTACAAGCATCAACACTTGAGATAGTTAATGTGATTGGTGAGGGGGAAAGGAGGGTGGGATTTTGGACACCCCAGAAGGGGATAGCAAGAAACATGGACACAAAGGGAGCATTACCAAGCATATATTCTACTTCTAAGAGAAATCTTGGTACTATTATATGGCCAGGGGATACTTACTCTGTTCCAAAAGGTTGGGAAATTCCTACCAGTGGGAGGAAGTTGAGGATAGGAGTTCCAGTGAAAACGGGAGATAGTTACACTGAATTTGTGAAAATAAAACATGACACAAGTACCAATTCAACAGTAGTAACTGGCTTCTGCATTGATGTGTTCAAAGCCGTGCTAGAAGCATTGCCTTTTGCCTTACCTTATGAATTTATTCCATTTGAAAAGTCGGATGGTGAGATGGCAGGAACATATGATGAGTTGATCAGCCAAGTTTATTATGGGAATTATGATGCAGTGGTGGGGGATACCACGATCATTGCAAACCGGTCCAACTATGTCGATTTCACAATGCCATATACAGAATCTGGTGTGACAATGGTTGTTCCAGTGAAAGATAACAGAAAGAAGAATGCTTGGGCCTTTCTGAAGCCTCTGACGTGGGATCTTTGGGTAACAACTGCTTGTTCATTCGTATTCATAGGGTTTGTGGTTTGGGTCCTTGAACACCGAATAAACAACAGTTTCAGGGGGCCTCCCTCCTACCAGATCGGCACAAGCTTATGGTTTTCCTTCTCAATAATGGTGTTTTCCCATCGGGAGAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTGACTGTGTGGGTTTTTGTGGTTCTAATTCTGGTTCAAAGTTACACTGCAAGCCTCACTTCCCTCTTAACAGTTGAACAACTACGCCCAACTATTACTGATGTCCATCAACTACTAAAGAATAGGATGAATGTTGGCTATTTGGAAGGTTCATTTGTTTATGGAATCTTAAAGGGTTTGGGATTCCAAGATGACCAGCTCAAAACTTATAAATCCCCAGAAGAATGCAATGAGCTTTTCATAAAAGGAAGTGCAAATGGTGGCATTTCTGCTGCGTTTGATGAAGTTCCCTACGTTAAGTACTTTCTTGGAAAAAGTTGCTGCTCCAAATATACCACAGTTGAACCAAGATTTAAAACTGGAGGCTTTGGCTATGTGTTCCCAAAAGGCTCCCCTCTTGTAGCCGACATTTCAAGAGCAATCTTGAATGTCACTCAGGGTGACAAAATGAAAACAATTGAGAATGCATGGTTCAAGAAAAGCACTTGTCTAGATTCCACTACAGAAATTTCCTCGGTTTACAGTCTTGGCCTTGAAAGCTTCTGGGGTTTGTTTCTTGTTGCAGGGATTGCGTCTCTATTAGCACTCCTAATCTTTGCAGTGACATTCCTATATCAGCACAGACATATCTGGTTACACTATGATCCTAGTACTTCAATATGGAGACGTATTGGTATCTTGGTTAGGATATTTGACCAAAGAGACTTGGAATGTCACACATTCAAGAAAAGTGAAACTAGTAGTCCTATTCATAACATAGGTGCAGTTGAGACCTCCCCAAGTACACATTGCCCACCTAGTCCATCTAGTCAATCTGAATCAAACTTTGCCTTTCATGGAGACTTAAGTCCAGATTATGGTGATACTGTACAACAGGGTGATGCTAATTGTCAAGACAGAGAAATGAATGTCGTGTAA 2895 0.4221 MVKNHQHPTKFVYFLIIFYSWSLSFIMNMGMAQRNETTVVKVGGVIDLTGMVGKMGLSCINMSLSDFYHSHSHYNTRIQFSFRDSHGDVVTAAAQALELIQNEQVQAILGPVTTMEANFMIRLGDKAHVTIITFSATSPSLVLLKSPYFFQIAQKDTAQVNAITSMVQAFGWKQVVPIYVDNSFGEGLIPALTISLQQAYIRVPYCSAISPSATDEVITQELYKLRTMPTRVFVVHMSPRLGSRLFAIAKSIGMMEQGYVWIVTDGIANLLNSLNSSVVESMEGVLGVRTYVPKTKELDGFKARWKRRFLLDNPTLVDANLNVFGMWAYDAATALAMAVEKVGAANFGYSNTSRNLHDLEEIGVARSGEKLREALSNTRFRGLSGDFNVVGGELQASTLEIVNVIGEGERRVGFWTPQKGIARNMDTKGALPSIYSTSKRNLGTIIWPGDTYSVPKGWEIPTSGRKLRIGVPVKTGDSYTEFVKIKHDTSTNSTVVTGFCIDVFKAVLEALPFALPYEFIPFEKSDGEMAGTYDELISQVYYGNYDAVVGDTTIIANRSNYVDFTMPYTESGVTMVVPVKDNRKKNAWAFLKPLTWDLWVTTACSFVFIGFVVWVLEHRINNSFRGPPSYQIGTSLWFSFSIMVFSHREKVVSNLARFVVTVWVFVVLILVQSYTASLTSLLTVEQLRPTITDVHQLLKNRMNVGYLEGSFVYGILKGLGFQDDQLKTYKSPEECNELFIKGSANGGISAAFDEVPYVKYFLGKSCCSKYTTVEPRFKTGGFGYVFPKGSPLVADISRAILNVTQGDKMKTIENAWFKKSTCLDSTTEISSVYSLGLESFWGLFLVAGIASLLALLIFAVTFLYQHRHIWLHYDPSTSIWRRIGILVRIFDQRDLECHTFKKSETSSPIHNIGAVETSPSTHCPPSPSSQSESNFAFHGDLSPDYGDTVQQGDANCQDREMNVV* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3953 964 Gene3D - 587 717 - -
Lja1g3953 964 PIRSF IGluLR_plant 8 942 IPR017103 -
Lja1g3953 964 PANTHER GLUTAMATE RECEPTOR 2.9 40 916 - -
Lja1g3953 964 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 916 - -
Lja1g3953 964 Gene3D - 768 824 - -
Lja1g3953 964 Gene3D - 368 467 - -
Lja1g3953 964 Gene3D - 157 318 - -
Lja1g3953 964 CDD PBP1_GABAb_receptor_plant 41 425 IPR044440 -
Lja1g3953 964 Pfam Ligand-gated ion channel 819 850 IPR001320 GO:0015276|GO:0016020
Lja1g3953 964 SMART GluR_14 468 819 IPR001320 GO:0015276|GO:0016020
Lja1g3953 964 SUPERFAMILY Periplasmic binding protein-like II 443 820 - -
Lja1g3953 964 MobiDBLite consensus disorder prediction 910 933 - -
Lja1g3953 964 Pfam Bacterial extracellular solute-binding proteins, family 3 493 818 IPR001638 -
Lja1g3953 964 Gene3D - 468 586 - -
Lja1g3953 964 CDD GluR_Plant 465 817 - -
Lja1g3953 964 Pfam Receptor family ligand binding region 59 405 IPR001828 -
Lja1g3953 964 SUPERFAMILY Periplasmic binding protein-like I 38 449 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3953 Lja-Chr1 50131475 50138498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3953 11 932 Ion Channels AT2G29120 51.876 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3953 K05387 - tcc:18587655 1120.53