Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3625 ATGGCGAAATCCAGCGCTGACGACGCGGAGCTCCGGCGAGCTTGCGAGGCTGCAATCGAAGGCACGAAGCAGAAGATCGTCTTGTCTATTCGAGTTGTCAAGACTATCGGCACCTGGGGAAAAACCTCCAAGCTTGGCCGTCAAATGGCCAAACCTAGGGTTCTCGCTATCTCCACAAAAGCAAAAACTCAACGGACAAAAGCTTTTCTTCGAGTTTTAAAGTATTCCAACGGAGGGGTTCTTGAGCCTGCTAAGATATACAAGCTGAAGCATCTCTCAAAACTGGAAGTTGTAACAAATGATCCTAGTGGATGTACGTTTACGTTGGGATTTGATAATCTTAGAAGCCAGAGTGTGGCTCCTTCACAGTGGACAATGCGCAATATTGATGACAGGAATCGCCTCCTGCTTTGTATCTTAAATATGTGCAAAGATGTCCTGGGTCGCCTTCCTAAGGTTGTTGGTATGGATGTTGTGGAGATGGCTCTTTGGGCAAAGGAAAATACACCTGCAGTTTCCACTCAAAGTAACCAACAAGATGGTGCTCCTGCTGAATCTTCTGTCACTGAAGCAGAATTGAAAGTCAATGTTGAAAAGGAACTTGTCTCCCAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGAACTTATATCATGGGTATTGGTGAAGCAGAGGCATTTTCTGAAAGGTTGAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGCGAACCTTTGATAGATGAGGTGTTGAAAGGGCTTGAAGCAGCTTCAAATTGTGTCGAAGACATGGATGAATGGTTAGGCATGTTCAATGTGAAACTCCGACATATGAGGGAGGATATTGAATCAATTGAAATCCGCAATAATAAGCTGGAAATGCAATCAGTAAATACAAGATCTCTCATTGAAAAGCTTGATAAGCTTCTTGAGCAATTGAGTATCCCTTCTGAGTATTCAGCATGTCTGACAGGAGATTCATATGATGAAGAACAAATGATGCAAAATATAGAAGCATGCGAGTGGTTGACCACTGCCTTGCGTGGTCTTGAAGTGCCTAATATAGATCCTACTTATGCAAATATGAGAGCTGTTAAAGAGAAGCGAGGCGAGCTTCAAATAATAAAATCTACTTTTGTCAGGAGGGCTACTGAATTCTTGAGGAATTACTTTGCTACTTTTGTTGATTTCATGATAAATGATAAAAATTACTTTTCTCAGCGGGGACAGTTGAAAAGGCCAGACCATGCTGACCTGCGGTTCAAGTGCAGGACATATGCACGTCTTCTGCAACATTTAAAGATTCTTGATAAGAATTGCTTGGGCCCACTGAGAAAATCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCAAGGAGGCTCGTCAGTTTGCCAATGAACTTCGTGCTAGTACTAAAGCTTCTAGAAATACAAATATTTGGCTTGAAGGTTCCTCCGGTTCTAGTCAGAATGTTAATTCTGCTGACACTGCTGTAGTTTCTGAATCATATGCAAAAATGCTAACAATTTTTATTCCACTTCTGGTGGATGAGAGCTCTTTTTGTGCACACTTTATGTGCTTTGAAGTTCCTACACTTGATGCTAACAAATCTGGATACAAGGATGATGCTAACGATGATGATTTGGGAATAGAGGACATTGATGAGAATGACAGTAAATCTGGTAAAAACTCTGCGGAACTTGCAGCTTTAAATGAATCACTTCAGGATTTGCTCGATGGAATTCAAGAAGACTTTTATGCTGTTGTGGATTGGGCATTCAACCTTGATCCTTTATGCTGTATATCAATGCATGGAACAACAGAACGCTATCTCTCCGGTCAGAAAAATGATGCAGCAGGATTTGTACGCCTTTTGCTTGGTGACTTGGAGTCTCGAATATCTATGCAATTCAGCCGTTATGTTGATGAAGCTTGCCATCAGATTGAAAGAAGTGAGCGCAATGTTCGCCAAACTGGTGTGCTACCGTACATTCCCAGATTTGCAACCCTTGCAACACGGATGGAACAGTACATCACAGGACAATCAAGGGATTTGGTTGATCAAGCATACACAAAATTTGTTAGCATAATGTTTGTAACTCTGGAAAAACTTTCACAAACAGATCCAAAGTATGCAGATATTTTTCTCATAGAGAACTATGCTGCTTTTCAGAATAGTTTGTATGACCTTGCCAACGTGGTGCCCACTTTGGCCAAGTTTTATCATCAGGCTAGTGAAGCCTATGAGCAAGCTTGTACACGCCACATCAGCATGATTATCTACTATCAATTTGAACGCCTCTTCCAGTTTGCTCGAAGGATTGAGGACTTGATTCTCAATAACCTTCAACCTGAAGAGGTCCCTTTCCAGATTGGGCTGTCAAAAGTTGATCTTCGGAAGATGCTAAAATCTAGTTTATCTGGGGTGGACAAGTCTATTGGTGCAATGTATAAGAAATTGCAGAAGAACTTGACTTCAGAGGAATTGCTGCCTTCCTTATGGGATAAATGCAAGAAGGATTTTCTGGATAAGTACGATACTTTTGCCCAACTTGTCGCCAAGATATACCCGGCTGAGTCAATTCTTTCTGTAGGAGAGTTGAGAAATCATTTAGCTTCTATGTAA 2643 0.4173 MAKSSADDAELRRACEAAIEGTKQKIVLSIRVVKTIGTWGKTSKLGRQMAKPRVLAISTKAKTQRTKAFLRVLKYSNGGVLEPAKIYKLKHLSKLEVVTNDPSGCTFTLGFDNLRSQSVAPSQWTMRNIDDRNRLLLCILNMCKDVLGRLPKVVGMDVVEMALWAKENTPAVSTQSNQQDGAPAESSVTEAELKVNVEKELVSQAEEEDMEALLGTYIMGIGEAEAFSERLKRELQALEAANVHAILESEPLIDEVLKGLEAASNCVEDMDEWLGMFNVKLRHMREDIESIEIRNNKLEMQSVNTRSLIEKLDKLLEQLSIPSEYSACLTGDSYDEEQMMQNIEACEWLTTALRGLEVPNIDPTYANMRAVKEKRGELQIIKSTFVRRATEFLRNYFATFVDFMINDKNYFSQRGQLKRPDHADLRFKCRTYARLLQHLKILDKNCLGPLRKSYCSSLNLLLRKEARQFANELRASTKASRNTNIWLEGSSGSSQNVNSADTAVVSESYAKMLTIFIPLLVDESSFCAHFMCFEVPTLDANKSGYKDDANDDDLGIEDIDENDSKSGKNSAELAALNESLQDLLDGIQEDFYAVVDWAFNLDPLCCISMHGTTERYLSGQKNDAAGFVRLLLGDLESRISMQFSRYVDEACHQIERSERNVRQTGVLPYIPRFATLATRMEQYITGQSRDLVDQAYTKFVSIMFVTLEKLSQTDPKYADIFLIENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLILNNLQPEEVPFQIGLSKVDLRKMLKSSLSGVDKSIGAMYKKLQKNLTSEELLPSLWDKCKKDFLDKYDTFAQLVAKIYPAESILSVGELRNHLASM* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3625 880 MobiDBLite consensus disorder prediction 169 189 - -
Lja1g3625 880 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Lja1g3625 880 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Lja1g3625 880 Pfam Exocyst complex component Sec3 491 863 IPR019160 GO:0000145|GO:0006887
Lja1g3625 880 Pfam Exocyst complex component Sec3 224 482 IPR019160 GO:0000145|GO:0006887
Lja1g3625 880 Coils Coil 188 208 - -
Lja1g3625 880 Coils Coil 221 248 - -
Lja1g3625 880 Coils Coil 281 301 - -
Lja1g3625 880 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 880 - -
Lja1g3625 880 MobiDBLite consensus disorder prediction 169 185 - -
Lja1g3625 880 PANTHER SEC3/SYNTAXIN-RELATED 1 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3625 Lja-Chr1 45031931 45055183 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3625 1 45031931 45055183 Lja1g3625 1 45031931 45055183 ECH
Lja5g3197 5 61993863 62006970 Lja1g3625 1 45031931 45055183 PCT