Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3594 ATGGCCTCAAGCTCTGTTTGGACAGCGAAACAGAACAAGAAGTTCGAGAACGCATTGGCCATCTATAACAAGGATACCCCGGATCGGTGGCAGAAGCTGGCTAAGGCCGTCGGAGGAGGGAAGACGGAGGATGAAGTAAGAATTCATTACCAGAAGCTTGTGGAAGATGTGAAGCTCATTGAGGAAGGACATGTTCCCCTGCCTAATTACAGAAATGTTGCACCTGCAGGAGGCAGGGCCAAAGAAGAAAAAAGGATGAAGGCTCTGAATCTCCAGTGA 279 0.491 MASSSVWTAKQNKKFENALAIYNKDTPDRWQKLAKAVGGGKTEDEVRIHYQKLVEDVKLIEEGHVPLPNYRNVAPAGGRAKEEKRMKALNLQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3594 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 92 IPR044636 GO:0003700
Lja1g3594 92 Pfam Myb-like DNA-binding domain 6 53 IPR001005 -
Lja1g3594 92 ProSiteProfiles Myb-like domain profile. 1 54 IPR001005 -
Lja1g3594 92 SMART sant 3 56 IPR001005 -
Lja1g3594 92 ProSiteProfiles SANT domain profile. 2 58 IPR017884 -
Lja1g3594 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 92 - -
Lja1g3594 92 SUPERFAMILY Homeodomain-like 5 61 IPR009057 -
Lja1g3594 92 Gene3D - 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3594 Lja-Chr1 44658966 44659652 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g3594 Myb_DNA-binding 3e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3594 1 44658966 44659652 Lja1g3594 1 44658966 44659652 ECH
Lja5g3242 5 62747652 62748818 Lja1g3594 1 44658966 44659652 PCT