Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3575 ATGGATTCAGTTTGTTCAGCCATGAGTGCCACCAATCTGGTTAAAGTCAGTGAAGGAGCTGGAAGAAGCACTGGAAGTGGTTTCTGGGGTGAGACTACAAGAGGGAGTCAGAAAGCAAGTTTCTTGAGTATTCAATCATGCAAGAGCAAGATTTCTCAAACCCATATCAAAGTTAGAAACTTCAAGCCAAGAGGAACTGGGGTTGCACGCGCTGTTATCACATCAGACATCAATGAAGAAGAGTCCACGGCATTTCAGGAGTCACACACTTTTGAGACTTCTAAAGCAGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGCTTATTTCCTCTTACTAGCAGAAGAGCCAAGCCTGCAGTCCCTATTGGAGGATGTTACAGGCTCATAGATATACCAATGAGCAATTGCATCAATAGTGGCATTAGGAAAATATTCATTTTAACACAGTTCAACTCTTTCTCCCTCAATCGCCACTTGGCCCGGGCATACAATTTTGGAAATGGCATGAATTTTGGAAACGGTTTTGTGGAGGTCTTGGCTGCTACTCAAACACCTGGAGAGGCAGGGAAGAAATGGTTCCAAGGGACAGCTGATGCTGTGAGGCAATTCATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATTTTGATACTTTCTGGGGATCATCTTTACCGGATGGACTATATGGACTTTGTACAGAAACATATCGACACAAATGCTGATATCACGGTTTCATGTTTACCCATGGATGACAGCCGTGCATCAGACTTTGGGCTGATGAAAATTGATAAAACAGGACGGATAGTGCAGTTTGCAGAGAAACCTAAAGGATCGGATCTGAAGGCAATGCATGTTGACACTACCCTCCTAGGGTTATCTCCAGAAGAAGCAAAGAATAATCCTTACATTGCATCCATGGGTGTCTACGTGTTTAGAACCGAGGTCCTGCTGAAACTATTAAGATGGAGCCATTCTTCGTGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAGTGATCACAATGTCCAGGCATATTTGTTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTGGCCCTAACAGAACATCCTCCAAAATTTGAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCAAGATTCCTACCACCCTCTAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATTTCTCACGGCTGCTTCTTGAGGGAGTGTAATGTTCAACATTCTATTGTTGGAATACGCTCACGTTTAGAGTCTGGTGTGGAGCTTCAGGATACCATGATGATGGGTGCTGATTACTATCAAACTGAGACGGAAATTGCATCTCTGGTGGCAGAAGGAAAGGTTCCAATTGGTGTTGGAGAAAATACCAAAATCAGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGGTTATTGCAAATACCGACGGTGTTCAAGAAGCGGAAAGACCTAAGGAAGGATTCTACATCAGGTCGGGCATCACAGTTACACTGAAGAATGCAACAATTAAAGATGGAACAGTCATTTGA 1605 0.4268 MDSVCSAMSATNLVKVSEGAGRSTGSGFWGETTRGSQKASFLSIQSCKSKISQTHIKVRNFKPRGTGVARAVITSDINEEESTAFQESHTFETSKADPKSVASIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLARAYNFGNGMNFGNGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMDFVQKHIDTNADITVSCLPMDDSRASDFGLMKIDKTGRIVQFAEKPKGSDLKAMHVDTTLLGLSPEEAKNNPYIASMGVYVFRTEVLLKLLRWSHSSCNDFGSEIIPSAVSDHNVQAYLFNDYWEDIGTIKSFFDANLALTEHPPKFEFYDPKTPFFTSPRFLPPSKVEKCKIVDAIISHGCFLRECNVQHSIVGIRSRLESGVELQDTMMMGADYYQTETEIASLVAEGKVPIGVGENTKIRNCIIDKNAKIGRNVVIANTDGVQEAERPKEGFYIRSGITVTLKNATIKDGTVI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3575 534 Pfam Nucleotidyl transferase 103 380 IPR005835 GO:0009058|GO:0016779
Lja1g3575 534 CDD LbH_G1P_AT_C 402 528 - -
Lja1g3575 534 CDD ADP_Glucose_PP 104 365 - -
Lja1g3575 534 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 534 IPR011831 GO:0005978|GO:0008878
Lja1g3575 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 101 496 IPR029044 -
Lja1g3575 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 83 399 IPR029044 -
Lja1g3575 534 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 107 126 IPR005836 GO:0005978|GO:0008878
Lja1g3575 534 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 534 - -
Lja1g3575 534 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 313 323 IPR005836 GO:0005978|GO:0008878
Lja1g3575 534 SUPERFAMILY Trimeric LpxA-like enzymes 396 534 IPR011004 -
Lja1g3575 534 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 102 498 IPR011831 GO:0005978|GO:0008878
Lja1g3575 534 Gene3D Hexapeptide repeat proteins 400 534 - -
Lja1g3575 534 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 198 206 IPR005836 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3575 Lja-Chr1 44476054 44479591 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3575 1 44476054 44479591 Lja1g3575 1 44476054 44479591 ECH
Lja5g3261 5 62964217 62969234 Lja1g3575 1 44476054 44479591 PCT