Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3554 ATGGACACCAATTCAGTTTCAAAGCTGCTACTAGTGTTGTTACTCACGGTCTTGTTTGCGGGTTTTGAGCTGATTCACTGCAATGTGAGCTATGATAGGAAGGCCCTTCTCATCAATGGCCAAAGGAGAGTCCTAATCTCTGGTTCCATTCACTATCCCAGAAGCACCCCTGAGATGTGGGAGGATCTAATTCAGAAAGCCAAACATGGAGGAATTGATGTCATAGACACTTATGTCTTCTGGGATGTCCATGAACCCTCACCTGGCAATTACAATTTTGAAGGAAGATATGATCTAGTTAGGTTCATTAAGACAGTGCAAAAGTTGGGGCTTTATGCCAATCTTCGCATTGGACCTTATGTATGCGCTGAGTGGAATTTCGGAGGGATTCCCGTTTGGTTGAAGTATGTTCCTGGCATAAGCTTCAGAACAGATAATGGGCCTTTCAAGGATGCAATGCAGGGTTTTACCAAGAAAATTGTCCAGATGATGAAGAGTGAAAAGTTGTTTCAGTCTCAGGGTGGTCCAATCATTCTTTCACAGATTGAGAATGAGTATGGACCGGAGAGTGGGGCGCTAGGAGGTGCTGGTCACGCGTACATAAATTGGGCTGCTAAGATGGCTGTTGGATTGGATACAGGAGTCCCCTGGGTTATGTGCAAGGAAACTGATGCCCCAGATCCTGTGATAAATTCGTGTAATGGCTTTTACTGTGATGATTTCTCTCCAAATAAACCATACAAGCCTAGCATATGGACTGAGTCCTGGAGTGGCTGGTTTACAGAATTTGGTGGCCCAGTTCACCAGCGACCAGTTGAGGATCTAGCATTTGCAGTTGCTCGATTCATACAAAAGGGAGGAACTTTTGTGAATTATTACATGTATCATGGAGGAACTAACTTTGGACGATCAGCTGGAGGCCCATTCATCACTGCAAGCTATGACTATGATGCTCCAATTGATGAATATGGTTTGATTAGGCAACCAAAATATAGTCATTTGAAGGATCTTCACGAAGCTATCAAGCGATGTGAGCATGCGTTGGTTTCTTCAGACCCTACTATTACATTATTAGGAACATTTCAGCAGGCTCATGTATTCTCGTCAAAAACTGGAGGTTGTGCAGCATTTCTTGCAAACTATCACGCACAGTCTGCTGCAAGAGTGACGTTCTATAACAGGAAATATGACTTGCCTCCTTGGTCCATAAGCATCCTTCCTGACTGCAAAGCGGATGTTTTTAATACTGCAAAAGTGAGAGTTCGAACTTCAAAGGTTCAAATGATTCCTGTCAATTTGAAGTTGTTCTCATGGGAGACCTATGATGAAGATCTCTCTTCTCTGGCTGAAAGTTCAAGGATTACAGCTCCTGGACTCTTAGAACAGCTGAATGTTACCAGGGACTCCAGTGACTATCTTTGGTACATAACAAGTGTTGACATAAGTTCATCAGAATCGTTTCTTGGAGGAGGACACCAACCAAGCATTAATGTGCAGTCCGCAGGACATGGTATCCACGTGTTTGTTAATGGACAGTATTCAGGGTCGGCTTTTGGGGCAAAGGAACAAAGAAGTTGCAAGTTTAATGGGCCAGTCAGCCTACATGCTGGAACAAATAAAATTGCACTTCTCAGCGTTACAGTTGGATTACAGAATGTTGGCCGGCATTATGAAACATGGAAGACAGGAATCAGTGGTCCAGTTTTGCTCCAGGGTCTTGACCACGGACAGAAAGATTTGACGAGTAATAGATGGTCATATCAGGTTGGCCTAAAAGGAGAGGCTATGAATTTGGTGTCTCCCAATGGGGCTTCATCTGTTGATTGGATCCAAGAGTCACTAGCCACCCAAAGCCGGTCACAATTGAAATGGCACAAGGCTTATTTTAACACCCCCGAGGGAAATGAACCGTTGGCATTGGACCTGGGAAGTATGGGGAAGGGTCAAGTGTGGATCAATGGACAGAGCATAGGAAGATATTGGCTGGCTTATGCAAAGGGTGACTGTAATTCTTGCAGCTATTCTGGGACATTCCGGCCAGTAAAGTGCCAACTTGGATGTGGACAACCTACTCAACGATGGTATCACGTTCCAAGGTCCTGGCTAAAGCCAACAAAGAACTTGATAGTAGTGTTTGAAGAATTAGGCGGAAATCCTTGGAAGATATCTTTAGTAAAGAGAATGGTACATACTGCAAGAGTTCACAGTGAACCTGATTCAGAGAACTAA 2229 0.4401 MDTNSVSKLLLVLLLTVLFAGFELIHCNVSYDRKALLINGQRRVLISGSIHYPRSTPEMWEDLIQKAKHGGIDVIDTYVFWDVHEPSPGNYNFEGRYDLVRFIKTVQKLGLYANLRIGPYVCAEWNFGGIPVWLKYVPGISFRTDNGPFKDAMQGFTKKIVQMMKSEKLFQSQGGPIILSQIENEYGPESGALGGAGHAYINWAAKMAVGLDTGVPWVMCKETDAPDPVINSCNGFYCDDFSPNKPYKPSIWTESWSGWFTEFGGPVHQRPVEDLAFAVARFIQKGGTFVNYYMYHGGTNFGRSAGGPFITASYDYDAPIDEYGLIRQPKYSHLKDLHEAIKRCEHALVSSDPTITLLGTFQQAHVFSSKTGGCAAFLANYHAQSAARVTFYNRKYDLPPWSISILPDCKADVFNTAKVRVRTSKVQMIPVNLKLFSWETYDEDLSSLAESSRITAPGLLEQLNVTRDSSDYLWYITSVDISSSESFLGGGHQPSINVQSAGHGIHVFVNGQYSGSAFGAKEQRSCKFNGPVSLHAGTNKIALLSVTVGLQNVGRHYETWKTGISGPVLLQGLDHGQKDLTSNRWSYQVGLKGEAMNLVSPNGASSVDWIQESLATQSRSQLKWHKAYFNTPEGNEPLALDLGSMGKGQVWINGQSIGRYWLAYAKGDCNSCSYSGTFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRMVHTARVHSEPDSEN* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3554 742 PRINTS Glycosyl hydrolase family 35 signature 172 187 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 PRINTS Glycosyl hydrolase family 35 signature 115 134 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 PRINTS Glycosyl hydrolase family 35 signature 60 78 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 PRINTS Glycosyl hydrolase family 35 signature 308 324 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 PRINTS Glycosyl hydrolase family 35 signature 620 634 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 PRINTS Glycosyl hydrolase family 35 signature 39 56 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 PRINTS Glycosyl hydrolase family 35 signature 647 663 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 PRINTS Glycosyl hydrolase family 35 signature 288 303 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 PANTHER BETA-GALACTOSIDASE RELATED 3 735 IPR001944 GO:0004553|GO:0005975
Lja1g3554 742 Gene3D - 595 733 - -
Lja1g3554 742 Pfam Glycosyl hydrolases family 35 36 340 IPR031330 -
Lja1g3554 742 SUPERFAMILY Galactose-binding domain-like 403 574 IPR008979 -
Lja1g3554 742 Gene3D Glycosidases 25 344 - -
Lja1g3554 742 Gene3D - 440 585 - -
Lja1g3554 742 Pfam Beta-sandwich domain in beta galactosidase 348 419 IPR041392 -
Lja1g3554 742 PANTHER BETA-GALACTOSIDASE 3 735 - -
Lja1g3554 742 SUPERFAMILY (Trans)glycosidases 28 344 IPR017853 -
Lja1g3554 742 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 174 186 IPR019801 GO:0004553|GO:0005975
Lja1g3554 742 SUPERFAMILY Galactose-binding domain-like 583 734 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3554 Lja-Chr1 44246291 44251480 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3554 1 44246291 44251480 Lja4g3179 4 60124214 60130088 ECH
Lja1g3554 1 44246291 44251480 Lja1g3554 1 44246291 44251480 ECH
Lja5g3280 5 63261563 63268310 Lja1g3554 1 44246291 44251480 PCT