Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3544 ATGGCTGAGGCGCGCCCCTTCCTCCTGTTGGCTCTCATCTTCTTCTCCGCCGCCGTAGCAACCGCCGCGGTGATCGACGATGCCGAAGATCTGCTCATCCGTCAGGTGGTGCCGGAGGTCGAAGATCACCTGCTCAACGCCGAGCACCACTTCTCCACCTTCAAGGCCAGGTTCGGCAAGACCTACGCCACCGAGGAGGAGCACAACTACCGGTTTGGAGTCTTCAAGAAAAACCTGATCCTAGCCAAATCGCACCAGAAGCTAGATCCCTCCGCCGTCCACGGCGTCACCAGATTCTCCGATCTCACTCCGTCGGAGTTTCGCCGTCAGTTCCTCGGCCTTAAGGCTCCTCGCCATCTCAAAGATGCTCAGAAGGCTCCGATCCTCCCTACCAACGATCTCCCTACCGATTTCGATTGGCGTGAGAAGGGAGCAGTTACTGAGGTCAAGAATCAGGGCTCGTGCGGATCCTGTTGGTCGTTCAGCGCTACTGGAGCCTTGGAAGGAGCTCATTATCTGGCCACTGGCGAGCTTGTTAGCCTCAGTGAGCAACAACTGGTCGATTGCGATCATGAGTGTGATCCTGAAGATTCTAGATCATGTGACTCGGGCTGTAATGGTGGGTTGATGACCAATGCATTTGAGTATACACTCAAGGCTGGTGGAGTGATGCGAGAGAAGGATTATCCTTATACTGGAAGGGATCGTGGCACTTGCAAATTTGAGAAAAGCAAAATTGCTGCTTCCGCGTCTAATTTCAGTGTGGTTTCTGTTGATGAAGATCAAATTGCTGCAAATCTGGTGAAGCATGGCCCTCTTGCAATTGGTATCAATGCAGTTTTTATGCAGACATACATCGGTGGAGTTTCATGCCCATACATTTGCGGCAAGCATTTGGATCATGGGGTTCTTCTGGTGGGCTATGGTGCTGGTGCTTATTCTCCCATTAGGCTGAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGGGGGAGACCTGGGGAGAGAATGGATATTACAAGATCTGCAGAGGACGCAATGTTTGTGGGGTGGACTCCATGGTCTCAACCGTAGCTGCTATACAGACCAACCACTAA 1098 0.5182 MAEARPFLLLALIFFSAAVATAAVIDDAEDLLIRQVVPEVEDHLLNAEHHFSTFKARFGKTYATEEEHNYRFGVFKKNLILAKSHQKLDPSAVHGVTRFSDLTPSEFRRQFLGLKAPRHLKDAQKAPILPTNDLPTDFDWREKGAVTEVKNQGSCGSCWSFSATGALEGAHYLATGELVSLSEQQLVDCDHECDPEDSRSCDSGCNGGLMTNAFEYTLKAGGVMREKDYPYTGRDRGTCKFEKSKIAASASNFSVVSVDEDQIAANLVKHGPLAIGINAVFMQTYIGGVSCPYICGKHLDHGVLLVGYGAGAYSPIRLKEKPYWIIKNSWGETWGENGYYKICRGRNVCGVDSMVSTVAAIQTNH* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3544 365 PANTHER CYSTEINE PROTEASE RD19C-RELATED 23 360 - -
Lja1g3544 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Lja1g3544 365 PRINTS Papain cysteine protease (C1) family signature 301 311 IPR000668 GO:0006508|GO:0008234
Lja1g3544 365 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Lja1g3544 365 PRINTS Papain cysteine protease (C1) family signature 323 329 IPR000668 GO:0006508|GO:0008234
Lja1g3544 365 SMART Inhibitor_I29_2 51 107 IPR013201 -
Lja1g3544 365 SMART pept_c1 134 359 IPR000668 GO:0006508|GO:0008234
Lja1g3544 365 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Lja1g3544 365 Pfam Papain family cysteine protease 134 357 IPR000668 GO:0006508|GO:0008234
Lja1g3544 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 323 342 IPR025661 -
Lja1g3544 365 Gene3D Cysteine proteinases 26 359 - -
Lja1g3544 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 299 309 IPR025660 -
Lja1g3544 365 CDD Peptidase_C1A 135 358 IPR039417 -
Lja1g3544 365 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 360 - -
Lja1g3544 365 SUPERFAMILY Cysteine proteinases 48 359 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3544 Lja-Chr1 44116851 44119207 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3544 1 44116851 44119207 Lja1g3544 1 44116851 44119207 ECH
Lja5g3287 5 63339915 63343437 Lja1g3544 1 44116851 44119207 PCT