Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3527 ATGAAGAACATCCCTTTGCTTCTCCTCCTCCTCACTCTCCTAGCCACGGCAGAAGCCGGCGGCGGAAAGTGGCAGCTCCTCCAACAAACCATCGGCATTGTCGGCATGCACATGCAGCTACTCCACAATGACCGTGTCATCATCTTTGACCGCACCGACTTCGGTTTCTCCAACCTCTCCTTACCCAAAGGTATGTGCCGCCACAACCTGCAAGAACTTGCGGTCAAAACAGATTGCACTGCGCACTCTGTGGAATACGACGTCACATCCAACACATTCCGCCCTCTCTTCATCCAAACCGACGTTTGGTGCTCATCCGGGTCAGCATCCCCGGACGGCTCATTGGTCCAGACCGGCGGTTTCAACGACGGAGACCGCGCAGTCCGGACCTTCAAACCATGCCAGAACAACAAATGTGACTGGCATGAAGAACAGAATCCCGGACTCGCGGTCCGAAGATGGTACGCGACCAATCACGTGCTGCCAGATGGACGGCAGATAATAATTGGAGGAAGGAGGCAATTCAGCTACGAATTCTACCCCAAAACAGAAACCACAGCAAAGAACACTTACAGTTTACCGTTTCTGGTTCAAACCAACGACCCCGGCATTGAGAATAATCTCTACCCCTTCGTTTTCCTCAACGTCGACGGCAACCTCTTCATCTTCGCCAACAACCGCGCCATTTTATTCAACCACGACAACGGTAAAGTCGTGAAGACTTACCCTCCCATACCCGGTGGTGACCCGAGATCCTACCCCAGCACCGGTTCCGCTGTTTTGCTTCCGTTGAGAATTTCAAACCCGCAACCACAACCGCCAAATGTGGAGGCTGAGGTTTTAATCTGCGGCGGAGCTCCGAGAGGCTCTTTTACACAGGCACTCACCCAGGGAAAGTTCGTCGGAGCTTTGAATACATGTGCCCGGATCAAGATAACCGACCCGGAACCTAAATGGGTCATGGAGACAATGCCGGGTGGTAGAGTCATGTCCGACATGCTGCTCCTCCCGAACGGCGATGTTTTACTCATCAACGGCGCAGCTTCCGGTGTCGCCGGCTGGGAACTGGGTAGAGACCCGGTTCTGAACCCGGTAATCTACAAAACAAATACCCGGGTCGGGTCACAATTCGAGTTACAAAACCCGACGAAAACCCCACGGATGTATCATTCCACCGCCGTTCTGCTACGTGACGGACGTGTTCTCGTCGCCGGGAGCAACCCACACGAGTATTACAATTTCAGCAGCGTGTTGTTCCCGACGGAGCTGAGTTTGGAGGCGTTTTCGCCTCCGTATTTGGAGCCGCAATACACCAACGTGCGTCCCAGAATCGTGTCCCCTACTCCCCAGGCCCAAACCAAACTCAAGTATGGCCAGGGGTTGAGGATACGGTTCCAGGTGACAGCGTTGTTGGCGGCTCCAGATTCTGTGTCTATGACAATGCTGGCGCCGCCTTTTAACACACACTCTTTCTCCATGAATCAAAGATTGTTGGTGCTGGAGCCAAATGGTTTGAAAGATGTTGGAGAATCAATACATGAAGTTGAGGTTACTGCACCTGGTTCAGCTACACTTGCACCACCTGGTTTCTATCTAGTGTTCGTGGTTCATCAGGGAATTCCAAGTGAGGGTATTTGGGTCCAAATACTGTGA 1653 0.5269 MKNIPLLLLLLTLLATAEAGGGKWQLLQQTIGIVGMHMQLLHNDRVIIFDRTDFGFSNLSLPKGMCRHNLQELAVKTDCTAHSVEYDVTSNTFRPLFIQTDVWCSSGSASPDGSLVQTGGFNDGDRAVRTFKPCQNNKCDWHEEQNPGLAVRRWYATNHVLPDGRQIIIGGRRQFSYEFYPKTETTAKNTYSLPFLVQTNDPGIENNLYPFVFLNVDGNLFIFANNRAILFNHDNGKVVKTYPPIPGGDPRSYPSTGSAVLLPLRISNPQPQPPNVEAEVLICGGAPRGSFTQALTQGKFVGALNTCARIKITDPEPKWVMETMPGGRVMSDMLLLPNGDVLLINGAASGVAGWELGRDPVLNPVIYKTNTRVGSQFELQNPTKTPRMYHSTAVLLRDGRVLVAGSNPHEYYNFSSVLFPTELSLEAFSPPYLEPQYTNVRPRIVSPTPQAQTKLKYGQGLRIRFQVTALLAAPDSVSMTMLAPPFNTHSFSMNQRLLVLEPNGLKDVGESIHEVEVTAPGSATLAPPGFYLVFVVHQGIPSEGIWVQIL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3527 550 SUPERFAMILY Galactose oxidase, central domain 84 434 IPR011043 -
Lja1g3527 550 Pfam Galactose oxidase-like, Early set domain 441 549 IPR015202 -
Lja1g3527 550 CDD E_set_GO_C 437 549 IPR015202 -
Lja1g3527 550 Pfam Glyoxal oxidase N-terminus 36 285 IPR009880 -
Lja1g3527 550 Gene3D - 18 438 IPR037293 -
Lja1g3527 550 PANTHER SECRETED PROTEIN-RELATED 10 549 - -
Lja1g3527 550 Gene3D Immunoglobulins 440 550 IPR013783 -
Lja1g3527 550 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 10 549 - -
Lja1g3527 550 SUPERFAMILY E set domains 437 549 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3527 Lja-Chr1 43965707 43967671 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3527 1 43965707 43967671 Lja1g3527 1 43965707 43967671 ECH
Lja5g3297 5 63934780 63937543 Lja1g3527 1 43965707 43967671 PCT