Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3518 ATGGGTTCTGTTTCTCTCAAGATAGGGGATGGAACAGCAAGGTTCAAAAGAGCAACTCTGTGTTCTTCAGCAACCAACATTCTCATGATCTTGGCTGTTATCACCACCAATCTCTTCGCTCTTTACTCTTTCACCGCTTCTCCTAAAGTCAACCACACCGAGCTGCTACTTCACCAAGCCCACAAGAATTTCTCCCTCATCTCAGAGCAGGTCACGCTCATACTCAGAGAAATTGACCAGTCTCAGAAGAAGCTTGCCCAGATAGAGAAAGAGCTTCTCGGCTATGACAGCGTCGATCTTTCGAGACCCAATATCGCAATTGAGCTTAAACTCTTCCTCAAACGCCACCAGCTTCCTCTAGGCAAGGATTCCAAAACTGGAATCACTGAAATGGTTTCCTCTGTTGGCCACTCCTGTGAGAAATATATGGAGTTCTTGTCTCAGTACATGGAGTACAAGGCTTTTGGAGCTTGCCCTGATGATTGGAGCATGGCACAGAAGCTGATTTTGAGAGGGTGTGAGCCTCTTCCTAGAAGGAGGTGTTTTTCAAAGACTATTTCTAAGGTAGGGGTTTACCCTTTTCCCTCTTCACTTTGGAAACCTGTTGCTAATAAAACTGTTAATTGGAGTGGTCTTGGGTGTAAGAATTTTGGATGCTTGAAGGGTAAGAAATTAAGCAGAGAATGCATTACTTGCTTTGATTTGGTTAATGGGTATGAGAATCATAGGTTTATCAAGGCTAAGAGTAAGAATGATTTTCTCATTGATGATGTGTTAGTGTTGGCAATGGGAAGTGGTGGAATTAGAATAGGACTTGACTTGGGAGGTGGGTCTGGATCCTTTGCTGCTACTATGGCTGAAAGGAATGTTACAGTGGTTACTACCACCCTGAACATTGATGCTCCATTCAGTGAGTTCATTGCAGCAAGAGGGCTTTTTCCTCTTTACTTGAGCTTAGATCATAGGTTCCCATTCTATGACAATGTGTTTGATTTGGTTCGTGCTTCAAGTACTTTGGATGTTGGAGGAGAAAAGCCTGAGAAGTTGGAGTTTTTGATGTTTGACATTGATCGTGTTTTACGGGCTGGTGGTTTGTTTTGGCTGGACAATTTCTATTGTGCTGATGAAGAGAAGAAGAAAGCATTGACTCGGTTGATTGAAAGGTTTGGATATAAGAAGTTGAAATGGGTTGTGGGAGAGAAGGTTGATGCTCTTGGATCAGGCAAAACTGAAGTTGTGTTATCTGCTGTTCTTCAGAAACCTGTGAGGGTGTAA 1275 0.4298 MGSVSLKIGDGTARFKRATLCSSATNILMILAVITTNLFALYSFTASPKVNHTELLLHQAHKNFSLISEQVTLILREIDQSQKKLAQIEKELLGYDSVDLSRPNIAIELKLFLKRHQLPLGKDSKTGITEMVSSVGHSCEKYMEFLSQYMEYKAFGACPDDWSMAQKLILRGCEPLPRRRCFSKTISKVGVYPFPSSLWKPVANKTVNWSGLGCKNFGCLKGKKLSRECITCFDLVNGYENHRFIKAKSKNDFLIDDVLVLAMGSGGIRIGLDLGGGSGSFAATMAERNVTVVTTTLNIDAPFSEFIAARGLFPLYLSLDHRFPFYDNVFDLVRASSTLDVGGEKPEKLEFLMFDIDRVLRAGGLFWLDNFYCADEEKKKALTRLIERFGYKKLKWVVGEKVDALGSGKTEVVLSAVLQKPVRV* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3518 424 Coils Coil 71 91 - -
Lja1g3518 424 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 1 424 - -
Lja1g3518 424 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 259 393 IPR004159 GO:0008168
Lja1g3518 424 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 1 424 - -
Lja1g3518 424 Gene3D Vaccinia Virus protein VP39 235 403 IPR029063 -
Lja1g3518 424 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 272 386 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3518 Lja-Chr1 43880788 43882400 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3518 1 43880788 43882400 Lja1g3518 1 43880788 43882400 ECH
Lja5g3307 5 64096819 64098649 Lja1g3518 1 43880788 43882400 PCT