Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3514 ATGGATCGGCGCTGGCCATGGAAGAAAAAATCGTCTGATAAGGCTGTGCCTGAGAAAGTAGCTGTTGCATTGGACTCCTCTGAAGCTTCCAACCAGGATAGCAGCAAGAAACCAAACTATGTCCAAATCTCTGTGGAATCCTATTCACACCTCACAGGTTTGGAGGATCAAGTGAAGACATATGAGGAAAAAGTTCAGAAGCTTGAGGATGAGATGCAGGAAATGAATGAAAAGCTTTCAGCGGCTAACTCTGAGATTGAAACCAAGGAAGGCATGGTAAAACAACATGCTAAAGTAGCTGAAGAAGCTGTCTCAGGCTGGGAAAAGGCTGAAGCTGAAGCTTTGGCATTGAAGAACCATCTCGAATCTGTCACTCTTTTGAAACTCACTGCTGAGGACCGTGCATCGCATTTAGATGGTGCTCTTAAAGAGTGTATGCGGCAGATACGGAACCTTAAGGAAGAACATGAACAGAATATACAGGAAGTTTCTCTCTCGAAAACCAAGCAATTAGACAAGATCAAGGGGGAACTTGAGGCTAAGATAGTTAACTTTGAACAGGAACTCCTTAGGTCTGCTGCTGAAAATGGGTCTTTGTCAAGATCCTTGCAGGAGCGCTCTAACATGATAGTCCAATTAAGAGAAGAAAAAGCTCAGGCTGAGGCGGAAATTGAGCATCTTAAGAGCAACATGGAATCGTGTGAAAGAGAAATTAATTCACTTAAATATGAACTTCATGTTATTTCCAAAGAACTGGAAATTCGCAATGAAGAAAAAAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCAAATGGAGGGCGTGAAAAAAATTGCCAAGTTAGAAGCTGAGTGCCAAAGATTACGTGGTCTAGTGCGGAAGAAGTTACCTGGTCCTGCTGCACTTGCACAGATGAAGCTAGAAGTTGAAAGTCTTGGCCGAGATCATGGAGAAAGTCGATCAAGGAAGTCTCCTGCGAGGCCTGCTTCCCCTAATTTCTCTCCATTACCTGAGTTCTCTTTGGAGAATATACAGAAATTCCAGAAGGAGAATGAATTTCTTACAGATCGTTTATTGGCAATGGAAGAAGAAATGAAGATGCTGAAAGAAGCTTTGGCTAAACGCAACAGTGAATTGCAGGCCTCTAGGAGTATGTGTGCTAAAACACTGAGCAAGCTTCAAAGTTTGGAACTTCAGACAAGTAACCAACAGAAGGGATCCCCAAAATCCATCATGCAAATTACCCATGAAAACATTTTTAGTCAAAACGCAAGCAACGCACCAAGCTTGGTCTCCATATCTGAAGATGGAAATGATGATGCAGGAAGTTGTGTCGAGTCTTGGTCTACTGCAATAACATCTGGGATATCCCAATTTCCTAAAGAAAACTTCACTGAGGAATCAAGCAAATCTGAATCCATTAAGAAGTTGGAACTAATGGACGACTTTCTAGAGGTGGAGAAATTTGCTCGCTTATCAAATGATTCCAATGTACATGCCACTATTTTAGTATCTTCAGATACTAAGACAGATGACATTGTGACCAATGATGTATCAGAAGTCGGTACTGACAAAGATGGTCTTTCTGAAAAGAATGACAACTCAAATCCATTGCCAAATCAAGTGTCTTCTGGTGCTTTGATGTCAGCACCTGGTCCCCAATCTGATGTTGGTGGTTTGTTATTAACAGAGCTCAGATCAAGAATATTACTGGTTTTTGAGTCCATTGCTAAGGATGCTGATATAGGGAAGATTGTGGAGGATATTAAACATGTGCTAGAAGATTCACATGACACATGTGATAGGCAGGACAATCCTGAAGATGCTGGTCTGAACCTTGAAAAAGAAACCATTTTATCCCAGCAACCCAAAGAATATGTGCAGATAACTTCTGATTTGGAAGCTGCAATTTCACATATTCATGATTTTGTTTTGTTCCTCGGCAAAGAAGCAATGGCTCTTCATGACATATCTTCTGATGGAAAAGAAATGAGCCAAAAGATTGAGGACTTTTCTGTCACCTTTAATAAAGTTTTATGCAAAAATGCAAGTCTGTTGCAATTTGTTCTTGACCTGTCTTACGTTTTAGCTAAAGCAAGCGAATTCCGATTTGATGTCCTTGGCTATAAACGTACAGAAGCTGAAACTAACAGTCCTGATTGCATAGATAAGATTGCTTTGCCTGAAAATAAGTTAGTTCAAGACACTTCATCTGGAGAAAGATATCAAAATGGTTGTTCACATGTTCTTAATCTCTGTTCTGATCCTGAGGTTCCTGATGACGGAAATTTGGTCTCGGGCTATCAAGCGAACGCTGCATCACAGAAGCTCTCAATGGAAGAATTTGAAGAAATGAAGCTTGAGAAAGAGAAAGCAGTAAATGATCTGTCAAACTGTACTGTGAATCTTGAAATGACGAAGTCTCAATTGCAAGAAACTGAGCAACTTCTGGAAGAAGTGAAGTCACAGCTCGCTTCTGCTCAAAGGTCGAACAGCTTGACTGAGACACAACTAAAGTGCATGGCAGAGTCTTACGAGTCACTCGAAACACGTGCCCTGGAGTTTGAAACTGAGCTAAACCGGCTGCAAATTAAGATTGAAACTCTGGAGAATGAGCTTCAAGATGAAAAGAGGGCTCATGAAGCTGCTTTGGCCAAGAGCAAGGAGCTAGAAGAACAGTTACTAAGGTTTGAGAGCTCATCAGCTGATAATGACCTCAAGACTCCGCAGGAGAGAGATTTGGCTGCGGCTGCTGAAAAGCTAGCCGAGTGTCAGCAAACTATATTTCTTCTGGGCAAGCAGTTAAATACTCTCTGTCCTCAATCTGAGCCAACTGAATCTCCTCACAGTAATATTAATCCCAAGTTTGAAGGCTCAAGAGTGGAAGAACCTGCTACTAGTAGCCCAAATTTTCAAAATTTTGGTCAGTTGGAGATGAACAATACTGCTACTGCATTTGTGAAAAGACCAGGTTCTGAGTCCCCTTTGCAGTTTTCCAATAGTTTGTTTAGCCCATCGGATAACGATTCACACCTTCCAGCAAGATCTCCAGTGCAGCATTCAAAATCAAAACCAAAACACAGGCCTTCCAAATCAGCCTCTTCTTCAGCTTCTTCCGCCACTACCCCGGAGAAACAAGCACGAGGATTCAGCAGATTCTTTTCACCAAAAGGAAAACATGTTCATTGA 3195 0.4163 MDRRWPWKKKSSDKAVPEKVAVALDSSEASNQDSSKKPNYVQISVESYSHLTGLEDQVKTYEEKVQKLEDEMQEMNEKLSAANSEIETKEGMVKQHAKVAEEAVSGWEKAEAEALALKNHLESVTLLKLTAEDRASHLDGALKECMRQIRNLKEEHEQNIQEVSLSKTKQLDKIKGELEAKIVNFEQELLRSAAENGSLSRSLQERSNMIVQLREEKAQAEAEIEHLKSNMESCEREINSLKYELHVISKELEIRNEEKNMSMRSAEAANKQQMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGRDHGESRSRKSPARPASPNFSPLPEFSLENIQKFQKENEFLTDRLLAMEEEMKMLKEALAKRNSELQASRSMCAKTLSKLQSLELQTSNQQKGSPKSIMQITHENIFSQNASNAPSLVSISEDGNDDAGSCVESWSTAITSGISQFPKENFTEESSKSESIKKLELMDDFLEVEKFARLSNDSNVHATILVSSDTKTDDIVTNDVSEVGTDKDGLSEKNDNSNPLPNQVSSGALMSAPGPQSDVGGLLLTELRSRILLVFESIAKDADIGKIVEDIKHVLEDSHDTCDRQDNPEDAGLNLEKETILSQQPKEYVQITSDLEAAISHIHDFVLFLGKEAMALHDISSDGKEMSQKIEDFSVTFNKVLCKNASLLQFVLDLSYVLAKASEFRFDVLGYKRTEAETNSPDCIDKIALPENKLVQDTSSGERYQNGCSHVLNLCSDPEVPDDGNLVSGYQANAASQKLSMEEFEEMKLEKEKAVNDLSNCTVNLEMTKSQLQETEQLLEEVKSQLASAQRSNSLTETQLKCMAESYESLETRALEFETELNRLQIKIETLENELQDEKRAHEAALAKSKELEEQLLRFESSSADNDLKTPQERDLAAAAEKLAECQQTIFLLGKQLNTLCPQSEPTESPHSNINPKFEGSRVEEPATSSPNFQNFGQLEMNNTATAFVKRPGSESPLQFSNSLFSPSDNDSHLPARSPVQHSKSKPKHRPSKSASSSASSATTPEKQARGFSRFFSPKGKHVH* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3514 1064 Coils Coil 51 92 - -
Lja1g3514 1064 MobiDBLite consensus disorder prediction 1032 1050 - -
Lja1g3514 1064 MobiDBLite consensus disorder prediction 942 956 - -
Lja1g3514 1064 Coils Coil 847 902 - -
Lja1g3514 1064 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1064 - -
Lja1g3514 1064 MobiDBLite consensus disorder prediction 991 1064 - -
Lja1g3514 1064 MobiDBLite consensus disorder prediction 517 553 - -
Lja1g3514 1064 MobiDBLite consensus disorder prediction 991 1019 - -
Lja1g3514 1064 MobiDBLite consensus disorder prediction 942 977 - -
Lja1g3514 1064 MobiDBLite consensus disorder prediction 314 337 - -
Lja1g3514 1064 Coils Coil 805 839 - -
Lja1g3514 1064 Pfam Filament-like plant protein, long coiled-coil 89 945 IPR008587 -
Lja1g3514 1064 SUPERFAMILY Tropomyosin 783 943 - -
Lja1g3514 1064 Coils Coil 168 195 - -
Lja1g3514 1064 Coils Coil 346 380 - -
Lja1g3514 1064 Coils Coil 203 269 - -
Lja1g3514 1064 Coils Coil 135 166 - -
Lja1g3514 1064 MobiDBLite consensus disorder prediction 534 552 - -
Lja1g3514 1064 PANTHER FILAMENT-PLANT-LIKE PROTEIN 1 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3514 Lja-Chr1 43848915 43854443 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3514 1 43848915 43854443 Lja1g3514 1 43848915 43854443 ECH
Lja5g3312 5 64295927 64301507 Lja1g3514 1 43848915 43854443 PCT