Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2848 ATGTGGCACTCTCAACCTGCTTCACCGGATCAACAACAAAACGCACAATCTCACAACAAAAACACACAAGACATGTCGGAGACAAGAGACCCTGCGATCAAGCTATTTGGGAAGACGATTCCGCTGCCGGAGATTGCTGCCGGATCGGGATACTCCGCCGGGGATGAGAATCATGCTTCTTCCACCGACTCTTCCAGGGAGTCCCACACCAACAGGGTGGTTGCACAGAAGCAACAAGAGACTGTGAAGGACACATTGGGAGAAAACCCAACTGATATTAAGAAGGAAGATGGAGTCCCCATGCAATTGGCGAAGGAGATCACGAATACAGATACAACCTCTAGGACCGGTGAAGAAGCTGTTACCCTGTCCACTGAGAGGGGGTCTACTACATTGAAAACTTCAAAGACTGAAGAAGGACAGAGCGAGACGAGTAATTCACAGGACAAGAATCTCAAAAAACCAGACAAAATACTTCCTTGTCCCCGCTGTAATAGCATGGACACCAAGTTCTGCTACTATAATAATTACAACGTCAACCAACCCCGACACTTCTGCAAGAATTGCCACAGATACTGGACTGCTGGTGGAACCATGAGGAATGTACCTATTGGTGCTGGTCGCAGAAAGAACAAGAACTCTTCTCCAATCAACCGCCCGATAACTGTCTCAGAAGCGATGCTGCAAAATACTCGGACAGACTTGCCAAATGGAGCAGCCCATCATCCTTCCTTGAAGGTTAATGGTACTGTCCTTACATTTGGATCCAATACACTTACATTTGGATCCAAAACACCCTTGTGCGAATCAATGACATCTGCTCTGAACCTTGCTGATAAATCCGTACCCAATTACACAAGGAATGGATTTCATAGTTCTGAAGAACTAAGAATTCATGTTCCCCATGGCAGTGGAGAAAAGGGCGATGATCAATCCAACAAGTCTTCTGTTACCTCCGCCAAGTCGATGGACAAAACAAGCACCAATGGCCCCCAAGAACAAGATAAGCAGAATTATCAGAGCTTCTCACCACAAGCTCCCTACTATCCTGGGACCGCTTGGCCTTCCCCATGGAATCCAGTGCAGTGGAACTCTCCGCCCCCACCACCCGTTTTTTGCTCACCAGGATTCGTTGCCCTGCCATTCTACCCTGCAACAACTTGGGGCTGTACCATACCAGGAGCGTTGAACACCCCATGGCTAGCTCAACCATCAACCCCAAATGGCGCAACAGCTAACTCAGGTCCTAACTCCCCAACCTTGGGTAAGCATTTAAGGGAAGAAAACATGCTGAAATCAAATGAGTCAACCAGCGGGAATGGACATAACAAAGAAAAGTGCTTGTGGGTTCCGAAAACTTTGAGGATTGATGACTCAGGAGAAGCAGCAAAAAGCTCTCTATGGACATCTCTCGGAATAAAAAACGATAAGGCTGAATCAGTCCCTGGAGGAGGACTTTTTAAAGCATTCACTTCAAAGCATGATGAGAAGAATCATTCAGTGCAAGCCTCGCCACTCTTGCAAGCCAATCCAGCGGCGTTTTCTAGGTCACTTAACTTTCATGAGACCTCATAA 1575 0.4717 MWHSQPASPDQQQNAQSHNKNTQDMSETRDPAIKLFGKTIPLPEIAAGSGYSAGDENHASSTDSSRESHTNRVVAQKQQETVKDTLGENPTDIKKEDGVPMQLAKEITNTDTTSRTGEEAVTLSTERGSTTLKTSKTEEGQSETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCHRYWTAGGTMRNVPIGAGRRKNKNSSPINRPITVSEAMLQNTRTDLPNGAAHHPSLKVNGTVLTFGSNTLTFGSKTPLCESMTSALNLADKSVPNYTRNGFHSSEELRIHVPHGSGEKGDDQSNKSSVTSAKSMDKTSTNGPQEQDKQNYQSFSPQAPYYPGTAWPSPWNPVQWNSPPPPPVFCSPGFVALPFYPATTWGCTIPGALNTPWLAQPSTPNGATANSGPNSPTLGKHLREENMLKSNESTSGNGHNKEKCLWVPKTLRIDDSGEAAKSSLWTSLGIKNDKAESVPGGGLFKAFTSKHDEKNHSVQASPLLQANPAAFSRSLNFHETS* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2848 524 MobiDBLite consensus disorder prediction 310 346 - -
Lja1g2848 524 Pfam Dof domain, zinc finger 156 213 IPR003851 GO:0003677|GO:0006355
Lja1g2848 524 MobiDBLite consensus disorder prediction 1 28 - -
Lja1g2848 524 MobiDBLite consensus disorder prediction 66 86 - -
Lja1g2848 524 MobiDBLite consensus disorder prediction 300 346 - -
Lja1g2848 524 ProSitePatterns Zinc finger Dof-type signature. 161 197 IPR003851 GO:0003677|GO:0006355
Lja1g2848 524 MobiDBLite consensus disorder prediction 483 508 - -
Lja1g2848 524 MobiDBLite consensus disorder prediction 401 420 - -
Lja1g2848 524 MobiDBLite consensus disorder prediction 87 101 - -
Lja1g2848 524 MobiDBLite consensus disorder prediction 105 148 - -
Lja1g2848 524 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 25 523 - -
Lja1g2848 524 MobiDBLite consensus disorder prediction 401 423 - -
Lja1g2848 524 PANTHER CYCLIC DOF FACTOR 2 25 523 IPR045174 GO:0003700|GO:0006355
Lja1g2848 524 ProSiteProfiles Zinc finger Dof-type profile. 159 213 IPR003851 GO:0003677|GO:0006355
Lja1g2848 524 MobiDBLite consensus disorder prediction 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2848 Lja-Chr1 34280286 34284001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2848 30 524 C2C2-Dof Transcription Factor Family AT5G39660 42.966 1.21e-104 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g2848 zf-Dof 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2848 - - aprc:113862693 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2848 1 34280286 34284001 Lja1g5531 1 95575368 95578386 ECH
Lja1g2848 1 34280286 34284001 Lja4g2141 4 22968548 22971116 ECH
Lja1g2848 1 34280286 34284001 Lja1g2848 1 34280286 34284001 ECH
Lja2g1169 2 11093820 11097163 Lja1g2848 1 34280286 34284001 ECH