Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2729 ATGGGAAGAGGTAGGGTTCAGCTGAAACGGATCGAGAACAAGACCAGTCTTCAAGTAACATTTTCAAAACGGAGAACGGGACTTCTCAAGAAAGCAAATGAAATCTCTGTGCTTTGTGATGCTCAGGTTGCTTTGATCATCTTCTCCTCCAAAGGCAAACTTTTTGAGTATTCTTCCGAACCCAGTGTGGAAGACATTCTGGAACGATATGAGAGGTATAACCATACAGAATGTGCTGGAACTGATCATGAAACACAGGGAAACTGGTCTTTCGAATACATGAAGCTCACTGCTAAAGTTCAAGTCTTGGAGAGGAACATAAGGAACTTTGTGGGACAAGATTTGGATCCCTTGAGTACTAAAGTGCTTCAGAGTTTGGAGCAACAGCTTGACACATCTCTAAAGCGCATCCGAACAAGAAAGAACCAAATTATGAATCAAAACATCTCAGAGATGCATAAAAAGACAAGGGCGTTGCAGGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGAGAAGACAAAGAAACTAACTGATGAAGGACCACAGAGCTGCCCAGAAACCACAGGCCAACATTGTTCATCCACCTCCAACTTATATTCTCCAAAGCTAATGCCACCACAAACACAGTTTCCTTCTCTAACTCACGGTGAGACTTTACAAGCAAGATTATCGCTGGAAGAAACGGTTGAAGCTCGAATCGCCCCCAGTAGTGGTACTCTCATCCCACCATGGATGCTGCATCATCTAACTAGTTAG 762 0.4331 MGRGRVQLKRIENKTSLQVTFSKRRTGLLKKANEISVLCDAQVALIIFSSKGKLFEYSSEPSVEDILERYERYNHTECAGTDHETQGNWSFEYMKLTAKVQVLERNIRNFVGQDLDPLSTKVLQSLEQQLDTSLKRIRTRKNQIMNQNISEMHKKTRALQEQNSKLAKMKEKEKTKKLTDEGPQSCPETTGQHCSSTSNLYSPKLMPPQTQFPSLTHGETLQARLSLEETVEARIAPSSGTLIPPWMLHHLTS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2729 253 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g2729 253 MobiDBLite consensus disorder prediction 182 201 - -
Lja1g2729 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja1g2729 253 Coils Coil 123 143 - -
Lja1g2729 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja1g2729 253 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lja1g2729 253 Coils Coil 152 172 - -
Lja1g2729 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja1g2729 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja1g2729 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja1g2729 253 MobiDBLite consensus disorder prediction 170 201 - -
Lja1g2729 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja1g2729 253 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lja1g2729 253 PANTHER MADS BOX PROTEIN 1 226 - -
Lja1g2729 253 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 226 - -
Lja1g2729 253 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Lja1g2729 253 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2729 Lja-Chr1 32540999 32548040 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja1g2729 K-box 6.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2729 1 32540999 32548040 Lja1g5449 1 92545461 92556064 ECH
Lja1g2729 1 32540999 32548040 Lja4g2064 4 22153053 22168942 ECH
Lja1g2729 1 32540999 32548040 Lja1g2729 1 32540999 32548040 ECH
Lja1g2729 1 32540999 32548040 Lja2g1508 2 14624737 14643619 ECH
Lja2g1279 2 12214763 12219042 Lja1g2729 1 32540999 32548040 ECH
Lja1g2729 1 32540999 32548040 Lja2g1508 2 14624737 14643619 PCT