Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2691 ATGTTGGAGCATGATCTCTTCACCTCCACCTCCACCACCACTGTCAAGGCCAAGTTTCCGCGTGTCTGTGACACGTGCCGCTCCGCCACATGCACCGTCTTCTGCCGCGCTGACTCGGCGTATTTGTGCGCCGGGTGCGACGCACAGGTACATGCGGCGAACCGGGTAGCCTCCCGGCACGAGCGTGTGTGGGTCTGCGAGGCCTGCGAGTGCGCCCCAGCCGCGTTTCTCTGCAAGGCTGATGCAGCTTCTCTCTGCTCCTCATGTGATGCTGACATCCACTCTGCTAATCCTCTTGCCAGCCGCCACCACCGCGTCCCCATTCTTCCCATCTCAGGCTGCCTCTATGGCCCTCCGGCCAACCTTTTAGGTGGTGAAGATGATGGCTTTGTCGGTGGTGGTGGTGAGATGGAAGATGAAGAGGAGGAGGTTGTTGATATGGAGGATGAAGATGAGGCTGCTTCTTGGTTGTTGCTGAATCCTGTGAAAAATAGCAACAACAACAATAACAATAATAACAATGAACACAATCAGCAGGGTAATGGTTTCTTGTTTAGTGGGGAGGTGGATGAGTATTTGGACCTTGTGGATTGTAATTCTTGTGGTGAAAACCAGTTCACCACCACTACTACTACTACCACTACTGATCATTACAACCACCACCAGCATCAGCAGCAGCATCAACAACATTATGGTGTTCCTCAAAAGGGCTATGCTGGGGATAGTGTGGTTCCAGTTCAGCAACAACAACAACAACAAGCACATCATTTTCAGCTTGGGTTGGAGTTTGAGCCCTCCAAAGCTGGGTTCAGTTACAATGGTTCTTCTATTAGTCAAAATGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGATTCAACAATGAGGGATGTCTCAGTTTCCTATTCAAGGCCCTCAAAAGGAACAATTGACCTATTTTCTGGACCTGCCCTTCAGATGTCTTCTCATTTTTCTCCATTGGACAGGGAGGCCAGGGTCCTAAGGTACAGGGAGAAAAAAAAGACAAGAAAATTTGAGAAGACAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGGATAAAAGGTCGATTCGCCAAGCGAACTGATGTAGAAGCTGAAGTTGATCAGATGTTCTCCACAACGCTAATCACAGAAGTTGGATATGGCATTGTTCCTTCCTTCTGA 1200 0.4908 MLEHDLFTSTSTTTVKAKFPRVCDTCRSATCTVFCRADSAYLCAGCDAQVHAANRVASRHERVWVCEACECAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGCLYGPPANLLGGEDDGFVGGGGEMEDEEEEVVDMEDEDEAASWLLLNPVKNSNNNNNNNNNEHNQQGNGFLFSGEVDEYLDLVDCNSCGENQFTTTTTTTTTDHYNHHQHQQQHQQHYGVPQKGYAGDSVVPVQQQQQQQAHHFQLGLEFEPSKAGFSYNGSSISQNVSVSSMDVGVVPDSTMRDVSVSYSRPSKGTIDLFSGPALQMSSHFSPLDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2691 399 CDD Bbox1_BBX-like 22 65 - -
Lja1g2691 399 SMART bboxneu5 18 65 IPR000315 GO:0008270
Lja1g2691 399 SMART bboxneu5 66 108 IPR000315 GO:0008270
Lja1g2691 399 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 17 399 IPR045281 GO:0009909
Lja1g2691 399 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Lja1g2691 399 ProSiteProfiles CCT domain profile. 330 372 IPR010402 GO:0005515
Lja1g2691 399 CDD Bbox1_BBX-like 65 108 - -
Lja1g2691 399 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Lja1g2691 399 Pfam CCT motif 330 372 IPR010402 GO:0005515
Lja1g2691 399 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Lja1g2691 399 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 17 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2691 Lja-Chr1 31853454 31856393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2691 19 399 C2C2-CO-like Transcription Factor Family AT3G02380 53.213 2.32e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja1g2691 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2691 - - zju:107405905 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2691 1 31853454 31856393 Lja1g2691 1 31853454 31856393 ECH