Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2563 ATGGTCTTCCCGTCCCTTCCAATCTACCTAGATCCACCCAACTGGCCACAACAACAGCAACCTAATAATCAGCAAGTCGGAATTTTCCCCCAGCAAAATTCACCACGACCGCCGCCGCCACAACCACCACCTTCAACTGACATAGTTGGAGGTGGTGGTGGTACTGGCGGCGGCTACCAGGGCTCTATCAGACCAGGATCAATGGCGGATCGAGCTAGGTTAGCCAAGATACACCAGCCTGATGCAACACTCAAGTGTCCGCGGTGTGAATCCACCAATACCAAGTTCTGTTACTACAATAACTACAATCTCTCACAGCCACGCCACTTCTGCAAGACATGCCGCCGGTACTGGACCAGAGGGGGTGCGCTGAGAAATGTTCCAGTTGGAGGTGGCTGCAGAAGGAACAAGAGAAGCAAAGGAAACAACTCAAAGTCTCCTATGAAATCTGATCATCGCCAAGGTGCTAATAATGGTTCTAGCTCTACAAGTGCTAACTCTTCTTCTAATGGAATCTCCACTAATGCTATGGTTGGTCATTTGCAAACTCAAACACCAACAACCCAATTTCCATTCTTGGCATCTTTACAACATTATAATAGTGACTATGTTTCTGGGAATATTGGTTCACATTTTGGGACAAGAAATGGCAATGGTACTAGTAGTGGAAGTGATATTGGTGAGTTTCAAATTGGTGTGGGTTCATCAAGTGGTAACAATGGTGGATCTTTGTTGTCGCCAAATGGCCTTGGTGAGCAATGGAGGTTGCCAAATTTACAACAAATTCATCATCAGCATCAGAGTCAGCAGCAACAGCAGCAGCATCACCAGTTCCCTTTCTTAACTAATGTGGAACCGCAAATTGGGTTGTTTCAGTTTGGTGGAGAAAACAATGCTGATCATGGAGGAAGGTTTAATAGTTCTAAGGCAATAGATTCTTCTAGTGTGAGTGGGATGGTGATGCCTCAGCATGATAACACTGTAAAAGTGGAAGGAAATGAAGGGTTGAATTTGCCAAAAAATCTCTTGAGTATTTCAGGAAATGATCCATTTTGGAATAATGGAAGTGGCAATGCATGGAGTGAAGAAGCTCCTAGCTTTGCTCCCTCGCCGAACCACTACTTGTGA 1128 0.453 MVFPSLPIYLDPPNWPQQQQPNNQQVGIFPQQNSPRPPPPQPPPSTDIVGGGGGTGGGYQGSIRPGSMADRARLAKIHQPDATLKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGNNSKSPMKSDHRQGANNGSSSTSANSSSNGISTNAMVGHLQTQTPTTQFPFLASLQHYNSDYVSGNIGSHFGTRNGNGTSSGSDIGEFQIGVGSSSGNNGGSLLSPNGLGEQWRLPNLQQIHHQHQSQQQQQQHHQFPFLTNVEPQIGLFQFGGENNADHGGRFNSSKAIDSSSVSGMVMPQHDNTVKVEGNEGLNLPKNLLSISGNDPFWNNGSGNAWSEEAPSFAPSPNHYL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2563 375 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677|GO:0006355
Lja1g2563 375 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 333 IPR045174 GO:0003700|GO:0006355
Lja1g2563 375 MobiDBLite consensus disorder prediction 126 174 - -
Lja1g2563 375 MobiDBLite consensus disorder prediction 148 174 - -
Lja1g2563 375 Pfam Dof domain, zinc finger 82 138 IPR003851 GO:0003677|GO:0006355
Lja1g2563 375 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677|GO:0006355
Lja1g2563 375 MobiDBLite consensus disorder prediction 214 251 - -
Lja1g2563 375 MobiDBLite consensus disorder prediction 12 31 - -
Lja1g2563 375 MobiDBLite consensus disorder prediction 32 46 - -
Lja1g2563 375 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 10 333 - -
Lja1g2563 375 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2563 Lja-Chr1 29912627 29914823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2563 1 140 C2C2-Dof Transcription Factor Family AT2G37590 61.379 4.21e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g2563 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2563 - - lja:Lj1g3v3220250.1 563.918