Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2534 ATGGCATACTACGATGATATTCAACCTATTGTTTTTGACAATGGATCAGGAGTGTTTAAGGGTGGACTTGTCAGATATGACGCTCCGCATGCTGTGTTTCCCAGCATCGTGGGGCGCTCTCAACATGCGGGTATGATGGTGGGCATAACCCGAAAAGATGCATATGTTGGCGATGAGGCAGACTCTAGAAGTGGCCTTCTAACTCTGAAATACCCAATTGAACACGGAGTTGTGAGCAATTGGGATGACATGGAAAAGATTTGGCACCATGCCTTTTATAATGAACTTCGTGTTTCCCCAGAAGAGCATCCTCTTCTTCTAACCGAGGTTCCCTTAAACACTAAGAATAACCGTGAGAAGATGACTCAAATCATGTTTGAGACTTTTAGTACCCCTGCTATGTATATATCCAACGGTGCTGTTCTCTCAATGTATGCAAGTGGACGTATAAATGGTATTGTATTGGAGTGTGGTGATGGTGTGACCAGCACTGCTCCTGTTTACGAGGGTTATGTCCTCCCACATGCCATCCAAAGTCTTAATTTTGGTGGTAGCGATATCACTAAATACTTGATAGATATTTTGGGTGAACGTGGCTATTCATTCACCAACTCCTCAGAGTGTAAAATTGTGAGGGACATGAAAGAAAAATTAGCTTACCTTGCCCTTAACTATGAGCATGAGCTAGCAACAGCCAAAACTAGTTCTTGTGTTGATTATGAGTTGCCAGATGGGCATGTAATCACTATTGGTGATGAGAGGTTCAAATGTCCAGAGGTTTTATTCCAACCATCCTTGATTGGTATGAAAGTACCTCACACTAATGATCCAGCACATGGTATTCATGAGATAATAAATGAATCCATAATGAAATGTGATTCTGAAATTAGGAAAGACTTCTACGGAAACATTGTCCTCTCCGGGGGATCAACCATGTTCCCAGGCATTGCTGATCGATTAACCAAGGAAATTACTAGTATAGCCCCTTCAAGCATTCGCATCAAAGTGGTTGCACCACCTGAGAGGAAGTACTCTGTTTGGATTGGTGGTTCTATCTTGGCATCACTTAGCACCTTCCAACAGATGTGGGTTACAAAGGCAGAATATGACGAGTCTGGTCCATCAATCGTGCATCAAAAGTGCTTCTAA 1149 0.4256 MAYYDDIQPIVFDNGSGVFKGGLVRYDAPHAVFPSIVGRSQHAGMMVGITRKDAYVGDEADSRSGLLTLKYPIEHGVVSNWDDMEKIWHHAFYNELRVSPEEHPLLLTEVPLNTKNNREKMTQIMFETFSTPAMYISNGAVLSMYASGRINGIVLECGDGVTSTAPVYEGYVLPHAIQSLNFGGSDITKYLIDILGERGYSFTNSSECKIVRDMKEKLAYLALNYEHELATAKTSSCVDYELPDGHVITIGDERFKCPEVLFQPSLIGMKVPHTNDPAHGIHEIINESIMKCDSEIRKDFYGNIVLSGGSTMFPGIADRLTKEITSIAPSSIRIKVVAPPERKYSVWIGGSILASLSTFQQMWVTKAEYDESGPSIVHQKCF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2534 382 SUPERFAMILY Actin-like ATPase domain 148 382 IPR043129 -
Lja1g2534 382 Pfam Actin 5 382 IPR004000 -
Lja1g2534 382 PANTHER ACTIN-11 1 381 - -
Lja1g2534 382 Gene3D Actin; Chain A, domain 4 182 278 - -
Lja1g2534 382 ProSitePatterns Actins signature 2. 363 371 IPR004001 -
Lja1g2534 382 PANTHER ACTIN 1 381 IPR004000 -
Lja1g2534 382 Gene3D - 10 373 - -
Lja1g2534 382 SUPERFAMILY Actin-like ATPase domain 4 148 IPR043129 -
Lja1g2534 382 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lja1g2534 382 Gene3D - 140 345 - -
Lja1g2534 382 PRINTS Actin signature 142 161 IPR004000 -
Lja1g2534 382 PRINTS Actin signature 51 62 IPR004000 -
Lja1g2534 382 PRINTS Actin signature 117 130 IPR004000 -
Lja1g2534 382 PRINTS Actin signature 236 252 IPR004000 -
Lja1g2534 382 PRINTS Actin signature 28 37 IPR004000 -
Lja1g2534 382 PRINTS Actin signature 63 85 IPR004000 -
Lja1g2534 382 SMART actin_3 7 382 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2534 Lja-Chr1 29404760 29407745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2534 1 382 Cytoskeleton Gene Families AT3G12110 73.177 0.0 592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1832 2 18873172 18875989 Lja1g2534 1 29404760 29407745 PCT