Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2514 ATGGAAGAAGGTTCAGAGACCGGGAAGAAAACGAAGATGACGCCATTGATGGATGAGCTGAAGAAGGTTGGCAAAATAGCGGCACCAATGGTGGTGGTGACTGTGCTGCAATATCTTCTGCAAGTGGCGTCAGTGATAATGGTTGGACATCTTAGCCAGCTCTCTCTTTCAAGTGTGGCTATTGCAACCTCCCTCACCAATGTTTCTGGCTTTAGCGTTTTGTCAGGGATGGCTGGTGGATTGGAAACTCTATGTGGCCAAGCTTTTGGAGCACAACAATATGAAAAATTTGGAACATATACCTACACTGCAGTAATATCCCTCACTATGGCTTCTGCACCAATCACTGTTCTATGGATTTTCTTGGACAAAATACTAATGTTCATAGGTCAAGACCATGAAATTTCCCATGAAGCTCAGAAATATGCCCTTTGGCTTATACCTGCTCTGTTTGCCTCAGCTATTCTGAAACCTCTAACGCGGTTTTTCCAGACTCAGAGTTTGATTTCTCCATTGATTCTAAGCTCTTTTGTGGTTTTGTGCTTTCATGTGGTGACTAGTTGGTGCCTGGTGTTTAAGTTGGGGTTCGGACATATTGGTACTGCAATTGGCTTCAGCTTGAGCACTTGGTTGAATGTGATTCTGCTTTTGTTATTTGTGAAGTGCTCCTCTGCTTGTGAGAAAACAAGGACTCCATTTTCTAAGAGGGCTTTGTCTGGTTTAGGAGAGTTCTTTCGCCTCGCTGTCCCTTCAGCAGCTATGGTTTGCGTCAAATGGTGGGCAAGTGAGTTGCTTGTTTTGCTGGCTGGACTTTTTTCCAATCCAGAGCTGGAGACATCAATTCTCTCTATATGCTTGACAATCTCTACATTGCACTTCACCATACCCTACGGATTTGGGGTTGCTGCTAGCACTAGAGTTGCAAATGAATTGGGAGCTGGGAATCCAAAAGCAGCTAGAGTGGTTGTTTCTATAGCCATGTCCCTTGCATTTATAGAGGCTGTCATTGTGAGCACAGCCCTGTTTGGCTTCAGACACATCCTAGGTTATGCCTATAGCAGTGATAGGGTGGTTGTTCATTATGTGGCTGTCATGACCCCTCTGCTATGTCTCTCTGTTTTTACGGACAGCTTGCAAGCAGTTATTTCAGGGGTTGCTAGAGGAAGTGGATGGCAACATCTTGGAGCCTATGTGAATATTGGAGCATTTTATCTGGTAGGAGTTCCTGTAGGTGTTCTACTTGGCTTTGTTGCACATTTCAGATCAAAGGGCCTTTGGATTGGAATAGTTTCAGGCTCCATTGTCCAAATAATTTTCCTCTTCCTCATCACTGCTCTTACAAACTGGAAAAAACAGGCAATGATGGCAAGGGTGAGAATACTTGATATATCTTCGGAAGTAAGTGAAGAAAATCACACAACAAGGGCAGCAAATCACACAACAAGTGCCTAA 1452 0.4401 MEEGSETGKKTKMTPLMDELKKVGKIAAPMVVVTVLQYLLQVASVIMVGHLSQLSLSSVAIATSLTNVSGFSVLSGMAGGLETLCGQAFGAQQYEKFGTYTYTAVISLTMASAPITVLWIFLDKILMFIGQDHEISHEAQKYALWLIPALFASAILKPLTRFFQTQSLISPLILSSFVVLCFHVVTSWCLVFKLGFGHIGTAIGFSLSTWLNVILLLLFVKCSSACEKTRTPFSKRALSGLGEFFRLAVPSAAMVCVKWWASELLVLLAGLFSNPELETSILSICLTISTLHFTIPYGFGVAASTRVANELGAGNPKAARVVVSIAMSLAFIEAVIVSTALFGFRHILGYAYSSDRVVVHYVAVMTPLLCLSVFTDSLQAVISGVARGSGWQHLGAYVNIGAFYLVGVPVGVLLGFVAHFRSKGLWIGIVSGSIVQIIFLFLITALTNWKKQAMMARVRILDISSEVSEENHTTRAANHTTSA* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2514 483 PANTHER MULTIDRUG RESISTANCE PROTEIN 10 456 - -
Lja1g2514 483 CDD MATE_eukaryotic 19 453 IPR045069 GO:0042910|GO:1990961
Lja1g2514 483 PANTHER PROTEIN DETOXIFICATION 10 456 - -
Lja1g2514 483 TIGRFAM matE: MATE efflux family protein 29 426 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g2514 483 Pfam MatE 29 188 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g2514 483 Pfam MatE 250 412 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2514 Lja-Chr1 29138466 29142518 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2514 1 29138466 29142518 Lja2g2160 2 24398136 24400810 ECH
Lja1g2514 1 29138466 29142518 Lja1g2514 1 29138466 29142518 ECH
Lja2g1818 2 18779356 18783379 Lja1g2514 1 29138466 29142518 PCT