Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2335 ATGATTAATGGTGTCTATTATCAAATTCCAAAAGTTATAAGTGGTGGATGGCTATGTGGATTATGTCATGGCGTTTGGAGGATCCAAGGATCTCTGGCTGTTTCTAGAGGAATTGGAGATGGGCACATGAAACAATGGGTGATAGCAGAACATGAGACCAGAGTTCTTCTTCTTAGAATTGAGGCTCGACATGACTTTTTAATCTTAGATTCGGATGCATTATGGGGAAAGGTGCAGGACTTGATCAATTCATTGTACTAA 261 0.3985 MINGVYYQIPKVISGGWLCGLCHGVWRIQGSLAVSRGIGDGHMKQWVIAEHETRVLLLRIEARHDFLILDSDALWGKVQDLINSLY* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2335 86 ProSiteProfiles PPM-type phosphatase domain profile. 1 86 IPR001932 -
Lja1g2335 86 Pfam Protein phosphatase 2C 15 79 IPR001932 -
Lja1g2335 86 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 15 79 - -
Lja1g2335 86 PANTHER PROTEIN PHOSPHATASE 2C 15 79 IPR015655 GO:0004722|GO:0006470
Lja1g2335 86 SUPERFAMILY PP2C-like 18 79 IPR036457 -
Lja1g2335 86 Gene3D - 11 82 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2335 Lja-Chr1 27034209 27034645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2335 23 80 PP2C-type Phosphatase Gene Family AT2G30020 68.966 3.02e-22 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2335 K17506 - lja:Lj0g3v0292169.1 183.341