Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1527 ATGTCTGAGACTAACAAAGATTCGGGTATCAAGCTGTTTGGTCGGAAAATTCTGGTGTCGCCGGAATGTCAGATTCCGGCTAACTCTGGACACACGGATGCTTTCAGCAGCACAAAGAAAACACAAGTGGAAACACCTTGTGCAGAATACTCTAAGCAACAAGAGAATCCTTCTGATTCAAGAGATATTAAAGAGGACTCTGAACATAATGTGAAGGAAAATAAGCCAATAGTGAATTCCAATCCTGTGGAGGATAATATGGACACTGATAATGCTGAACAAGATAAAATCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGATGCAACAGCATGGACACAAAGTTTTGTTATTTCAATAACTACAATGTCAATCAACCTAGGCATTTCTGCAAGAGCTGCCAAAGGTATTGGACTGCTGGTGGCACGATGAGAAGCGTTCCTGTAGGCGCTGGGAGGCGGAAGAACAAGCAACTAGCCTCGCAATTCCGGCACATTATAGTGAACTCTGAAGGAATTCCAACCTCTAGGCTAGAAACCACAGGCTCATATGGTTACCAGCAGCACATGTCAAGTGATTTTAGGCCTTCAACAGAGAATGGGACTGTGTTGAAATTCGGTCCAAATGCCCCTCTCTATGAGTCAATGGAGTCAATGCTTAATCTTAGAGAACAGAAAAGAATTGCTGATTCAAATTCTTCCAGTTGTGTGGAATATGGAGAGGAGCCATCCACATGTGTTTCTTCAGTGACAAATTCCGCTACTCAAGGAAATGAATTTTCAGAGAACAATACATCAAATTTGTTGCAGTACCACCCTGTTCCTCCTTGGGTATTACCATGGAATCCAGGTTGGAACAATGTTGCTTCCTTGGGAGTGATTCATCAGTCTTCATCACCAATGTGTAACCCTGCAATGCAATGGTGTCCCGCACCAATGGTGGCTATTCCAGGCACTTGCCCAACTAGCATTCCTTTGCAACATGTACCAGCATCATACTTGGGGGGAACACCACTTTATGCTGCTGGAACCGGGACATTATCGACCGGATCCAATGCTTGTGTTTCGCCATCTTCCTCCACCACTACCAGTTCCTGCTCCGGCAATGGCTCCCCAATCCTTGGCAAACACACTAGAGATATTACAGTTTTCACAGATGATGAGAGATCAGAGAATTGTGTTTTGGCTCCAAAGGCCATTAGAATCTGTGACCCAAATGAGGCCTCAAAAAGTTCTTTATGGACTACATTATCTATCAAGCCTGATAAACTGCATCAATCTTTATCAGATGGTGGTTGTTTGAGGAAAATTGAACCTAAAGGAGACGGTGAAGACCGTGTATTAGGCGCTTCTCAAATCTTGGAAGCCAACCCAGCAGCTATTTCTCGCGCTCATGCATTCCAGGAAAGCACATAA 1419 0.439 MSETNKDSGIKLFGRKILVSPECQIPANSGHTDAFSSTKKTQVETPCAEYSKQQENPSDSRDIKEDSEHNVKENKPIVNSNPVEDNMDTDNAEQDKILKKPDKIVQCPRCNSMDTKFCYFNNYNVNQPRHFCKSCQRYWTAGGTMRSVPVGAGRRKNKQLASQFRHIIVNSEGIPTSRLETTGSYGYQQHMSSDFRPSTENGTVLKFGPNAPLYESMESMLNLREQKRIADSNSSSCVEYGEEPSTCVSSVTNSATQGNEFSENNTSNLLQYHPVPPWVLPWNPGWNNVASLGVIHQSSSPMCNPAMQWCPAPMVAIPGTCPTSIPLQHVPASYLGGTPLYAAGTGTLSTGSNACVSPSSSTTTSSCSGNGSPILGKHTRDITVFTDDERSENCVLAPKAIRICDPNEASKSSLWTTLSIKPDKLHQSLSDGGCLRKIEPKGDGEDRVLGASQILEANPAAISRAHAFQEST* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1527 472 MobiDBLite consensus disorder prediction 55 73 - -
Lja1g1527 472 MobiDBLite consensus disorder prediction 25 54 - -
Lja1g1527 472 MobiDBLite consensus disorder prediction 24 89 - -
Lja1g1527 472 Pfam Dof domain, zinc finger 102 159 IPR003851 GO:0003677|GO:0006355
Lja1g1527 472 ProSitePatterns Zinc finger Dof-type signature. 107 143 IPR003851 GO:0003677|GO:0006355
Lja1g1527 472 ProSiteProfiles Zinc finger Dof-type profile. 105 159 IPR003851 GO:0003677|GO:0006355
Lja1g1527 472 PANTHER CYCLIC DOF FACTOR 2 1 471 IPR045174 GO:0003700|GO:0006355
Lja1g1527 472 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1527 Lja-Chr1 16536340 16538980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1527 1 470 C2C2-Dof Transcription Factor Family AT3G47500 35.378 3.44e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g1527 zf-Dof 5.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1527 - - gmx:100813787 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1527 1 16536340 16538980 Lja1g1527 1 16536340 16538980 ECH