Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0954 ATGGAATCTCAAAACAAGAACAACCCTCAAAACTTGGCCACTCACCAGATAACAGCACTTGTTGTAGATGACAATGCCCTCAACCGAAAGATTCATCAACAGCTGCTGAACAGTGCTGGAGTGAAAAATGTTCAAGTGGCGGGAAATGGCAAAGAAGCAGTGGATATTCATAGGCGTGGACAAAGATTTCACCTAATTCTCATGGACAGGGACATGCCTATCATGAATGGCGTTGAGGCAACAAAGGAACTTCGTTCAATGGGCATTTGTAGCATGATTGTTGGGGTGTCATCCCGCGATACCGAAGTGGAAATACAAAATTTCATGGAAGCAGGTTTGGATGACTACCAAGAGAAACCCTTGAAGAGTGCTAAGCTTAGTTCAATTCTTGATAAGATCAAGCCCAATTTTAATTTCCAGTGA 423 0.4279 MESQNKNNPQNLATHQITALVVDDNALNRKIHQQLLNSAGVKNVQVAGNGKEAVDIHRRGQRFHLILMDRDMPIMNGVEATKELRSMGICSMIVGVSSRDTEVEIQNFMEAGLDDYQEKPLKSAKLSSILDKIKPNFNFQ* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0954 140 Pfam Response regulator receiver domain 20 130 IPR001789 GO:0000160
Lja1g0954 140 SUPERFAMILY CheY-like 16 134 IPR011006 -
Lja1g0954 140 ProSiteProfiles Response regulatory domain profile. 18 134 IPR001789 GO:0000160
Lja1g0954 140 SMART REC_2 17 130 IPR001789 GO:0000160
Lja1g0954 140 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 136 - -
Lja1g0954 140 Gene3D - 1 138 - -
Lja1g0954 140 CDD REC_hyHK_CKI1_RcsC-like 20 130 - -
Lja1g0954 140 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 3 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0954 Lja-Chr1 9424634 9425276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0954 17 130 Response Regulator Gene Family AT3G04280 49.138 9.04e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g0954 Response_reg 9.8e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0954 - - gmx:100794931 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0954 1 9424634 9425276 Lja1g0954 1 9424634 9425276 ECH