Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0884 ATGCACATCACTCCAGAAGAGCCGCCGCAGCACCAGAGTTCCGGTATCGGACATGTATGCGGATCCACCTCCACGGATCTATACGATTCACTGGACATTTACTTCCCTAAACAACTCTTCACCGTCGAAGAAACCTGGCTCAACCTCGCCGCTGATCTTCACTCCTTCTTCTCCTCTCCGACGGGCCAAAACATCGCTTCTCAGGTGAAAAATGATTTCGGAAACTATGTCCTGTCACTGGACTTTCAGCAGTTCAAAGCAATGTGTCATGTTGAGGAATTTTATGAAATGTTAATGGAGAAACCGAAAATTGCTCTCTCATGTATGGGCGCTGCCGTTCACCAGGTTTTGCTTTCCAATTGGGAGAACGACAAGCAGGAGCTCGATGGAAAGGTAGATATCCGGCTTCATAACTGTCCTGAAACCATGATTGCACTGAAGAACTTAAAAGCAGCTTACATAGACAAGCTTGTCTCAGTGCGTGGAACTGCTGTGAAAGTCAGCACTGTGAGGCCTCTTGTGGTAGAAATGAGTTTTGAATGCAGTAAGTGTAAACAAGTAGTTACGCGTATATTTCCTGATGGAAAATTTTCACCTCCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAAATTTCAATCCATTGCGATCTACTGCCAAAACCATTGATTTTCAAAAAATAAGAGTTCAAGAATTACTAAAGCATGAAGATCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGTGAGCTTACCCAAGATCTTGTTGATTCATGCATACCTGGAGACGTGGTGACTGTTACTGGAATTATAAGAGGAATTAGCACTTACATGGATATTGGTGGAGGAAAATCAAAGAATAAAAACCAAGGATTTTACTATCTGTATCTTGAAGCTATATCCATTAAAAATTCAAAATCACAGTCCATACCTGAGGATGCGCAAGACTCTAATCCAAAAGCTAGGCCGACTGAGCTGTTTGATTTGTTTTCGTTTTCTTCAAAGGATTTAGAGTTTGTTGTCAAGTTTGCCGATGAGCATGGTTCAGATTTATTTCGACAAATCCTTCAATCTATTTGCCCGTCTATCTATGGACATGAGCTCGTTAAAGCTGGGATAACACTAGCATTATTTGGCGGGGTAAGAAAGAATTCTATGGATCAAAACAAGGTTCCTGTGCGGGGAGATATTCATGTCATAGTTGTTGGTGATCCTGGTCTAGGTAAGAGTCAGTTGCTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAACGCTACAACCAAAGCTGGCCTCACAGTAGCTGTTGTGAAGGATGCCATGACAAATGACTATGCTTTTGAGGCTGGTGCTATGGTTCTGGCTGATAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCAGCAGAGCATCAGGCTTTACTGGAGGCTATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGGTTAGTAGCAAGTTTGTCATCCCGAACGTCTGTCTTAGCAGCTGCGAACCCCGTTGGTGGTCATTACAACCGGGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTCTCCCGTTTTGATTTAATTTTCATACTGCTGGACAAACCTGATGAACTTCTGGACAAGCGACTTTCGGAGCACATTATGTCACTTCATTCTGGGCATGGACAACATTCACCGGCATTGAAAAAGCGACGTGGAGATCAACCTTCCGATTCTCGAGCTGCAGTATCACAGAATGCTGAAGGAGTAGATTTTAGTGTTAGACCTGGTTCTTTAATTTCCAAGTTAAAACTTGACCCACGGAGAGACCGTGATTTTGTTCCACTACCTGGTCAACTCCTTCGCAAATACATTGCCTATGCAAGGAGTTTTGTCTTTCCTAGGATGACCAAGCCAGCAGCAGATATCTTACAAAAGTTTTACCTTAAACTGAGAGATCATAATACTTCGGCTGATGGTACTCCAATAACAGCAAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGAGCTCGGCTGGACTTGAGAGCAGAAATAACTGTCCAGGATGCAATGGATGTTGTTGAAATCATGAAGGAATCCTTGTATGATAAATATGTTGATGAAAATGGTGTCGTGGATTTTGGTCGAAGTGGGGGTATGAGTCAACAGAAAGAGGCAAAGCGCTTTCTAAATGCCCTCAACAAGCAATCAGAACTAGAACAGAAAGATTGCTTCTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCGCTGAAAGTTCCCGATATTGACACTTTCATCGATAATTTAAACAGCGTTGGTTTCTTACTCAAAAAAGGACCAAAGACATACCAGGTTTTATCCTCTTCTTATTCAAGGAGCCAATCGTTTAGGACAAGGGGCTAA 2430 0.428 MHITPEEPPQHQSSGIGHVCGSTSTDLYDSLDIYFPKQLFTVEETWLNLAADLHSFFSSPTGQNIASQVKNDFGNYVLSLDFQQFKAMCHVEEFYEMLMEKPKIALSCMGAAVHQVLLSNWENDKQELDGKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQVVTRIFPDGKFSPPSTCNLNGCKSKNFNPLRSTAKTIDFQKIRVQELLKHEDHEEGRVPRTVECELTQDLVDSCIPGDVVTVTGIIRGISTYMDIGGGKSKNKNQGFYYLYLEAISIKNSKSQSIPEDAQDSNPKARPTELFDLFSFSSKDLEFVVKFADEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKNSMDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDAMTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRLSEHIMSLHSGHGQHSPALKKRRGDQPSDSRAAVSQNAEGVDFSVRPGSLISKLKLDPRRDRDFVPLPGQLLRKYIAYARSFVFPRMTKPAADILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRAEITVQDAMDVVEIMKESLYDKYVDENGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRISLKVPDIDTFIDNLNSVGFLLKKGPKTYQVLSSSYSRSQSFRTRG* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0884 809 MobiDBLite consensus disorder prediction 562 592 - -
Lja1g0884 809 Pfam MCM AAA-lid domain 625 708 IPR041562 -
Lja1g0884 809 SUPERFAMILY Nucleic acid-binding proteins 73 276 IPR012340 -
Lja1g0884 809 Gene3D - 173 223 - -
Lja1g0884 809 Gene3D - 146 275 IPR012340 -
Lja1g0884 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 482 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0884 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 506 518 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0884 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 395 410 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0884 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 533 541 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0884 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 455 469 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0884 809 ProSiteProfiles MCM family domain profile. 352 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0884 809 Pfam MCM P-loop domain 350 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0884 809 SMART mcm 142 709 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja1g0884 809 SMART AAA_5 396 548 IPR003593 -
Lja1g0884 809 Gene3D - 330 717 IPR027417 -
Lja1g0884 809 PANTHER DNA HELICASE MCM8 24 804 - -
Lja1g0884 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 714 IPR027417 -
Lja1g0884 809 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 24 804 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja1g0884 809 Coils Coil 467 487 - -
Lja1g0884 809 Pfam MCM OB domain 146 274 IPR033762 -
Lja1g0884 809 CDD MCM8 356 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0884 Lja-Chr1 8656133 8666713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0884 40 795 Core DNA Replication Machinery Family AT3G09660 72.523 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0884 K10737 - gmx:100784549 1356.66