Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0068 ATGGAAGCAGGGTTAGCTCCAAATTCATGCACAACAAGGGGAGTGTTAGAGAAGAAGACAAGGCCACAACCACAAGAGCAAGTGAATTGTCCAAGGTGCAATTCAACCAACACCAAGTTCTGCTATTACAACAACTACAGCCTCACACAACCGAGATACTTCTGCAAGACATGCAGAAGGTATTGGACAGAAGGAGGGTCTCTCAGAAATGTCCCAGTTGGAGGTGGTTCAAGGAAGAACAAGAGGATCATTACCTCAGCTTCACCAAAGGTTATTCCAGACTTAAATCCACCAATTCCAAATGCAAGCCTTAATAAAGTGCAACAAGTAGGCCATGATCTTAATTTGGCTTTTCCAGCTATGGGGAATTATCATCATGGTCATGGCATGTCATCTCCATATGTTGAAATGGGTCATGACACCAGTAATTACCATAGCTCTTCTTCTTGTTCTACTGCTCCAATTGATCTATTAAGGTCTGGCTTGGTGGGTTCTAGGGGTTTGAATAATCCTTATGTTGTGATGCCAATGAGCTCAAATTCCCTTTACCCTGCATCTGGGACTGGGTTTCCCATGCAGGAAATGAAACCAAGTCTTGGGCTGGGCTTTTCACTTGATGGGCTTGAAAACAGATCATATGATGAGATCCAACAGAATGGTGGTGGGAGTGGGAGACTTTTGTTCCCTTTTGGAGGAGACACCAAGCAAGTTGAAGTGGAACACAGTAATAAAGAACAAGGGAACAAATCAACTGCATATTGGACTGGAATTAATGACTGGTGA 783 0.4342 MEAGLAPNSCTTRGVLEKKTRPQPQEQVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRIITSASPKVIPDLNPPIPNASLNKVQQVGHDLNLAFPAMGNYHHGHGMSSPYVEMGHDTSNYHSSSSCSTAPIDLLRSGLVGSRGLNNPYVVMPMSSNSLYPASGTGFPMQEMKPSLGLGFSLDGLENRSYDEIQQNGGGSGRLLFPFGGDTKQVEVEHSNKEQGNKSTAYWTGINDW* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0068 260 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Lja1g0068 260 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Lja1g0068 260 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 258 IPR045174 GO:0003700|GO:0006355
Lja1g0068 260 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Lja1g0068 260 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 14 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0068 Lja-Chr1 595589 597666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0068 21 257 C2C2-Dof Transcription Factor Family AT3G61850 48.638 3.04e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g0068 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0068 - - gmx:778110 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0068 1 595589 597666 Lja1g4791 1 64879554 64881573 ECH
Lja1g0068 1 595589 597666 Lja1g0068 1 595589 597666 ECH
Lja3g1739 3 19426001 19427854 Lja1g0068 1 595589 597666 ECH
Lja1g0068 1 595589 597666 Lja3g1739 3 19426001 19427854 PCT