Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0640 ATGTCGGAGCTTAAAGACCCGGCGATTAAGCTTTTTGGGCGCACGATTTCTCTCCCACTCCACCGCCCTCCCTCCGCCTCCTCCTTTAATGATTCCTCCGATGATCATACTCCTCCTTCCTCTTCCTCTTCTCCACGCGAAGTCAGCTCTTCAATAATACACTCCCACCCTCAGGAGTTGTCAAGGAATGAACTCACCTCAGTACAAGCTGATGATGCCTCCTATGAAAGCACAGAGGATTTAAAATCTCCCTCAGCATCTTCAGGCATTTTTGAGAATCCTAAGACTCCCTCAGCAGAAAGAGAGACTTCTTTACTCAAATCTGCTAAACATGGAGAACAAAGTGAGACAAGCAATTTAGAAGAAAAAACTCTGAAAAAACCTGACAAGATACTTCCATGCCCGAGATGCAGTAGCATGGACACCAAATTCTGTTATTTTAACAATTACAATGTCAATCAGCCCCGCCATTTCTGTAAGAACTGTCAGAGATACTGGACTGCTGGAGGAACCATGAGAAACGTGCCTGTAGGCGCAGGTCGTCGTAAGAACAAAAACTCTTCAGCCTCACAGTATCGTCAAATAATGGTTCCAAAGACCCTTCAGATTGCCAGAGAAAACTCTACCAATGGATTGCACAATGCTGTTTTAGGAAATAGAGCAGCTGTCTTGACCTTTGGCTCGGATTCTCCTCTTTGTGATTCCCTGGTTTCTGTATTAAACCTTGCAGATAAAACACAGAACGGTGCTCTAAATGGGTTTCATTTACCTGAGCGAAATAATTTTGTCTCTTATGTGAGAGAAGATAATGGGAACGATCACTCCATTGGAGCTTCTGGTACAGCTTCAACTTCTTCAGAGAGGAAAAACAACACTGCTTCACAAGAAACTGTAAATAACATTAGTCATGGTTTCCCTCCTCAATCTCCATGTGTCCCAGGTTCCTCATGGCCTTATCAATGGAACTCAGCGCAGTGGAGTTCTCCGGTCCCTCCTCCCGGATTCTCTCCTCAAGGATATCTGGCATCGTTCTATTCTAGTCCTATGTATTGGGGTTGTGCCTTACCAGCTTCATGGAACATACCATCCATATCTGCACAATCATCTTCTGTTAGTCAATCAGCCCCTAGCTCTGGCCCTAATTCACCTTCTCTTGGAAAACACTCGAGGGAAGGGAACATTATCAACCAAGTTAACTCGCCAAAAGAAAATCCTAATATGGAGAGTGGCAATTCAGAAAGTAGCGTCTTGATTCCCAAGACTCTACGATTCGATGATCCCAATGAAGCCGCAAAGAGTTCTATATGGTCAGCATTAGGGATGAAGAATGAGAAGGCCACTTCTCTGAATGGAGGGGGCCTTTTCAAGGCATTTCCTGTAAAGAGGGATAATAAGGATCATGTAGTTGAACCATCACTGGTGTTGCAAGCCAACCCAGCAGCTTTATCACGATCTCTTACTTTCCATGAACAGATTTAA 1479 0.4429 MSELKDPAIKLFGRTISLPLHRPPSASSFNDSSDDHTPPSSSSSPREVSSSIIHSHPQELSRNELTSVQADDASYESTEDLKSPSASSGIFENPKTPSAERETSLLKSAKHGEQSETSNLEEKTLKKPDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRQIMVPKTLQIARENSTNGLHNAVLGNRAAVLTFGSDSPLCDSLVSVLNLADKTQNGALNGFHLPERNNFVSYVREDNGNDHSIGASGTASTSSERKNNTASQETVNNISHGFPPQSPCVPGSSWPYQWNSAQWSSPVPPPGFSPQGYLASFYSSPMYWGCALPASWNIPSISAQSSSVSQSAPSSGPNSPSLGKHSREGNIINQVNSPKENPNMESGNSESSVLIPKTLRFDDPNEAAKSSIWSALGMKNEKATSLNGGGLFKAFPVKRDNKDHVVEPSLVLQANPAALSRSLTFHEQI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0640 492 ProSiteProfiles Zinc finger Dof-type profile. 132 186 IPR003851 GO:0003677|GO:0006355
Lele56g0640 492 PANTHER CYCLIC DOF FACTOR 2 1 491 IPR045174 GO:0003700|GO:0006355
Lele56g0640 492 MobiDBLite consensus disorder prediction 21 103 - -
Lele56g0640 492 MobiDBLite consensus disorder prediction 369 414 - -
Lele56g0640 492 MobiDBLite consensus disorder prediction 14 124 - -
Lele56g0640 492 ProSitePatterns Zinc finger Dof-type signature. 134 170 IPR003851 GO:0003677|GO:0006355
Lele56g0640 492 MobiDBLite consensus disorder prediction 274 306 - -
Lele56g0640 492 Pfam Dof domain, zinc finger 129 186 IPR003851 GO:0003677|GO:0006355
Lele56g0640 492 MobiDBLite consensus disorder prediction 273 309 - -
Lele56g0640 492 MobiDBLite consensus disorder prediction 104 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0640 Lele-ChrLele56 4781584 4784533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0640 1 492 C2C2-Dof Transcription Factor Family AT3G47500 40.748 5.59e-91 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele56g0640 zf-Dof 9.3e-32 No_clan