Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1393 ATGCCGTCAAACTCCGGCGACAATCCCCGACCATCCAAGTCTCAAGCTCCGCCACCGGAACAAGAGCACCTACCATGTCCTCGCTGCGACTCCACCAACACCAAGTTCTGCTACTACAACAATTATAACTTCTCCCAGCCTCGCCATTTCTGCAAGTCTTGTCGACGCTACTGGACTCACGGCGGGACTCTCCGCGACATCCCCGTCGGCGGTGGCAGTCGCAAGAACGCGAAACGCTCTCGCACTGCCTCTACGGTTTCTTCCTCCCTCACAGCGACTTCTTCAGTTTCTTCTCAGGACCATCCTCTTCCTACAACCCCTGTATTTGTACCCATCTCGGCCGGCCAAGGAGGGTCCATGCCGTTTGGGGGTAACGGCGGAGTTGAGAGTGATTTGAAATCTAGCATGGGAATGTGTGGAAGCTTCACTTCTTTGCTTAACAACACCGCCCAAGGGCCTGGGTTTCTGGCTCTAGGCGGGTTCGGGCTCGGACTCGGTCACGGGTTTGAAGATATGGGATTTGGGAATGGAAGAGGAGGCTGGGCTTTTCCTGGTATGGTGGATGGCGCCAACATTAACGGTGGGGTTGGGGCTTCCGGCGTCGGGAACTCATGGCAGCTAGAAGGCGGCGAAGGTGGTTTTGTTGGTGGCGCAGACTGCTTCTCCTGGCCAGGACTTGCAATTTCAACACCTGGAAATGGTCTGAAATGA 711 0.557 MPSNSGDNPRPSKSQAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTASTVSSSLTATSSVSSQDHPLPTTPVFVPISAGQGGSMPFGGNGGVESDLKSSMGMCGSFTSLLNNTAQGPGFLALGGFGLGLGHGFEDMGFGNGRGGWAFPGMVDGANINGGVGASGVGNSWQLEGGEGGFVGGADCFSWPGLAISTPGNGLK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1393 236 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Lele55g1393 236 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Lele55g1393 236 MobiDBLite consensus disorder prediction 65 104 - -
Lele55g1393 236 MobiDBLite consensus disorder prediction 77 104 - -
Lele55g1393 236 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Lele55g1393 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 117 IPR045174 GO:0003700|GO:0006355
Lele55g1393 236 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1393 Lele-ChrLele55 20295687 20296397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1393 20 236 C2C2-Dof Transcription Factor Family AT3G50410 54.936 3.30e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele55g1393 zf-Dof 3.1e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0102 53 750825 751535 Lele55g1393 55 20295687 20296397 hybridization
Lele54g0103 54 819686 820396 Lele55g1393 55 20295687 20296397 hybridization