Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0673 ATGTCGGAGCTTAGAGAGCCGGCGATTAAGCTTTTTGGGCGGACGATTTCTCTCCCACTCAACCGCCCTCCCTCCCTCCCCACCTTCAATGATTCCTCCGATGATCATACTCCTCCTTCCTCTTCGTCTTCTCCAGGCGAAGTCAGCTCTTCAACACACCACCACCCTCTCCGCCCTCAGGAATTGTCAAGGAATGAACTCACCTCAGTACAAGATGATGATGCCTCCTATCAAAGCGCAGAGGATTTAAAATCTCCCTCGGCATCTTCAGGCATTTTTGAGAATCCTAAGACTCCCTCAGCAGAAAGAGAGACTTCTTTACTCAAGTCTGCTAAACATGGAGAACAAAGTGAGACGAGCAATTTAGAAGAAAAAACTCCGAAAAAACCAGACAAGATACTTCCCTGCCCGAGATGCAATAGCACGGACACCAAATTCTGTTATTTTAACAATTACAATGTCAATCAGCCCCGTCATTTCTGTAAGAACTGCCAGAGATACTGGACTGCTGGAGGAACCATGAGAAATGTGCCTGTAGGCGCAGGTCGCCGCAAGAACAAAAACTCTTCGGCTTCTCAGTACCGTCAAATAATGGTTCCAAAGACCCTTCAGATTGCCAAAGAAAACTCTACCAATGGATTGCACAATGCTTTTTTAGGAAATGGAGCAGCTGTCTTGACCTTTGGCTCAGATTCTCCTCTTTGTGATTCCATGGTGTCTATGTTAAACCTTGCAGAGAAAACACAGAATGGTGCTCTAAATGAGTTTCATTTACCCGACCAAAATAATTTTGTCTCTTATGGTAGAGAAGATAATGGGAATGATCACTCCGTTGGAGCTTCTGGTACAGCTCCAACTTCTTCAGAGAGGAAAAACAACACTGCTTCACAAGAACCTGTGAATAACATTAGTCATGGTTTCCCTCCTCAATTGCCATGCTTCCAAGGTTCCTCATGGCCTTATCAATGGAACTCAGTGCAGTGGAGTTCTCCGGTCCCTCCTCCCGGATTCTGTCCTCAAGGCTATCCGGCATCGATCTATCCCAATCCTATGTATTGGGGTTGTGCTTTACCAGCGTCATGGAGCATACCATCTATATCTGCACAATCATCTTCGGTTAGCCAATCAGCCCCTAGCTCTGGCCCTAGTTCACCTTCTCTTGGAAAACACTCAAGGGAAGGGAACATTATCAACCAAGTCAACTTGCCAAAAGAAAATCCTAATATGGAGAGTGGCAATTCAGAAAGTAGTGTCTTGATTCCAAAGACTCTACGAGTTGATGATCCCAATGAAGCCGCGAAGAGTTCTATATGGTCAGCATTAGGGATGAAGAATGAGAAGCCCACTTCTCTGAATGGAGGAGGCCTTTTCAAGGCATTTCCTGTAAAGAAGGATGACAAGAACCATGTGGTTGAACCATCACTGGTGTTGCAAGCCAACCCGGCAGCTTTATTGCGATCTCTTACTTTCCATGAGCAGATTTAA 1485 0.4545 MSELREPAIKLFGRTISLPLNRPPSLPTFNDSSDDHTPPSSSSSPGEVSSSTHHHPLRPQELSRNELTSVQDDDASYQSAEDLKSPSASSGIFENPKTPSAERETSLLKSAKHGEQSETSNLEEKTPKKPDKILPCPRCNSTDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRQIMVPKTLQIAKENSTNGLHNAFLGNGAAVLTFGSDSPLCDSMVSMLNLAEKTQNGALNEFHLPDQNNFVSYGREDNGNDHSVGASGTAPTSSERKNNTASQEPVNNISHGFPPQLPCFQGSSWPYQWNSVQWSSPVPPPGFCPQGYPASIYPNPMYWGCALPASWSIPSISAQSSSVSQSAPSSGPSSPSLGKHSREGNIINQVNLPKENPNMESGNSESSVLIPKTLRVDDPNEAAKSSIWSALGMKNEKPTSLNGGGLFKAFPVKKDDKNHVVEPSLVLQANPAALLRSLTFHEQI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0673 494 MobiDBLite consensus disorder prediction 264 307 - -
Lele55g0673 494 MobiDBLite consensus disorder prediction 371 393 - -
Lele55g0673 494 ProSitePatterns Zinc finger Dof-type signature. 136 172 IPR003851 GO:0003677|GO:0006355
Lele55g0673 494 MobiDBLite consensus disorder prediction 21 105 - -
Lele55g0673 494 MobiDBLite consensus disorder prediction 13 135 - -
Lele55g0673 494 Pfam Dof domain, zinc finger 131 188 IPR003851 GO:0003677|GO:0006355
Lele55g0673 494 ProSiteProfiles Zinc finger Dof-type profile. 134 188 IPR003851 GO:0003677|GO:0006355
Lele55g0673 494 PANTHER CYCLIC DOF FACTOR 2 1 493 IPR045174 GO:0003700|GO:0006355
Lele55g0673 494 MobiDBLite consensus disorder prediction 106 132 - -
Lele55g0673 494 MobiDBLite consensus disorder prediction 264 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0673 Lele-ChrLele55 4479178 4482143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0673 4 492 C2C2-Dof Transcription Factor Family AT5G39660 37.931 2.59e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele55g0673 zf-Dof 1.1e-31 No_clan