Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1028 ATGTCACAAGAAAATAATTCTCCTTCGAAGGAGGAAGCTGCGAAGGAAGATGGTAGCCAGAGCTCCGGCGGTGGCCGGAAAAACGCCGCTGCGAGGCCACCAGAACAAGGTCTGAAGTGTCCAAGGTGTGACTCGCCCAACACCAAATTCTGTTACTACAACAATTACAGTCTGACGCAGCCGAGGCATTTCTGCAAGACGTGCCGGAGGTACTGGACCAAGGGCGGAGCCCTACGCAACGTTCCGATCGGTGGCGGCTGCAGGAAGAACAAGAAGGTGAAGTCGTCTTCTTCGAGGCTCTCAGCCGACTCCAAGGACCCCGGATTCCCGGGGGAGCTTGGTGGCTTCAAGTTTTTCCATGGCCTTTCACCCTCACTGGATTTTCATCTCGGAGGGTCCCTTCCCTTCCCTAAACTTAACCATCTTCAACCTCCACCCATATATAACCCAATCTCTTCCTTTGGGGATGTTCAAGCGGCCACCTTTGATCCGTCTGGAAGCTCAAATTCTATGATTAATTTCAATTACCCATCAACAGGAGGAGGATTCAGCAGTGTAATTCAGGGTATGAGCTCTATGAACGTTAACAGTAACCTTGCTTCTTCAATTGAATCATTGAGTTCGGTTAATCAAGACTTGCACTGGAAGATACAACAACAGAGGTTGGCGATGCTGTTTGGCGGTGACGATAATGGCCAGAAAGACGACGGTGTTTCAGGCGCGGTTCCTCTTGAGAACCAAATCCAGAGACCACAACCCATTTTGTTTCAGAATCTCGAGATTTCAAAGCCTGAGATCAATTGCGTGGCCGCCGGAAATTCCAGAAAAGAAGGCCCAGCTTCTGGTGATACCCCTACAGAGTGGTTCTTTGGGAATTCTTTTGCCTCCGTGGCTCCTACGCCCACCAGTACCAGTAGTGGTGGGAATAATGGCCATGATAATGCAACCAATAACTGGAGTTCTGTTCATGCTTGGGGTGATGTGCAGCAGCAATATAATGCTTTGCCCTAG 1011 0.4985 MSQENNSPSKEEAAKEDGSQSSGGGRKNAAARPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSSSRLSADSKDPGFPGELGGFKFFHGLSPSLDFHLGGSLPFPKLNHLQPPPIYNPISSFGDVQAATFDPSGSSNSMINFNYPSTGGGFSSVIQGMSSMNVNSNLASSIESLSSVNQDLHWKIQQQRLAMLFGGDDNGQKDDGVSGAVPLENQIQRPQPILFQNLEISKPEINCVAAGNSRKEGPASGDTPTEWFFGNSFASVAPTPTSTSSGGNNGHDNATNNWSSVHAWGDVQQQYNALP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1028 336 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Lele54g1028 336 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Lele54g1028 336 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Lele54g1028 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 220 IPR045174 GO:0003700|GO:0006355
Lele54g1028 336 MobiDBLite consensus disorder prediction 299 319 - -
Lele54g1028 336 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1028 Lele-ChrLele54 16415604 16416614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1028 1 336 C2C2-Dof Transcription Factor Family AT5G65590 40.563 1.63e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele54g1028 zf-Dof 1.3e-32 No_clan