Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1048 ATGATGTCGCAGGAAAATAATTCTCCTTCTAAGGAGGCAGCTGCAATAGAAGATAGTAGCCAAAGCTCCGGCGGTGGCCGGAAAAACGCCCTTACGAGACCACCAGAACAAGGTCTGAAGTGTCCAAGGTGTGACTCGCCCAACACCAAATTCTGTTACTACAACAATTACAGCCTGACGCAGCCGAGGCATTTCTGCAAGACGTGCCGAAGATACTGGACCAAGGGAGGAGCCCTACGCAACGTTCCGATCGGTGGCGGCTGCAGGAAGAACAAGAAGGTGAAGTCGTCTTCTTCGAGGCTCTGCGACGACTCCAATGACCCTGGATTCCCGGGGGAGCTTGGCGGCTTCAAGTTTTTCCATGGCCTTTCACCCTCACTGGATTTTCATCTTGGAGGGTCCCTACCCTTCCCAAAACTGAACCATCTTCAACCTCCACCCATATATAACCCGGTCTCATCCTTAGGGGATGTTCAAGCGGCCACCTTTGATGCGTCTGGAAGCTCAAATTCTATGATTAATTTCAATTATCCGTCAACAGGAGGAGGATTCAGCAGTGTAATTCAGGGTATGAGCTCTATGAACGTCAACAGTAACCTTGCTTCTTCAATTGAATCATTGAGTTCGGTTAATCAAGACTTCCACTGGAAGCTACAACAACAGAGGTTGGCGATGCTGTTTTGCGGTGACGATAATGGCCAGAAAGACGACGGTGTTTCAGGAGTGGTTCCTCTTGAGAACCAAATCCAGAGACCACAACCCATCTTGTTCCAGAATCTTGAGATTTCAAAGCCTCAGATGAATTGCGTGCCCGCCGGTAATTCCAGAAAAGAAGGCCCAGCTTCTGGTGATACCCCTACGGAGTGGTTCTTTGGGAATTCTTTTGCTTCCGTGACTCCTACGCCCACTAGTACCAGTAGTGGTGGGAATAATGGCCATCATGATAATGCAACGAATAACTGGAGTTCTGTTCATGCTTGGGGTGATGTGCAGCAGCAATATAATACTTTGCCCTAG 1017 0.4887 MMSQENNSPSKEAAAIEDSSQSSGGGRKNALTRPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSSSRLCDDSNDPGFPGELGGFKFFHGLSPSLDFHLGGSLPFPKLNHLQPPPIYNPVSSLGDVQAATFDASGSSNSMINFNYPSTGGGFSSVIQGMSSMNVNSNLASSIESLSSVNQDFHWKLQQQRLAMLFCGDDNGQKDDGVSGVVPLENQIQRPQPILFQNLEISKPQMNCVPAGNSRKEGPASGDTPTEWFFGNSFASVTPTPTSTSSGGNNGHHDNATNNWSSVHAWGDVQQQYNTLP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1048 338 MobiDBLite consensus disorder prediction 1 28 - -
Lele53g1048 338 MobiDBLite consensus disorder prediction 1 39 - -
Lele53g1048 338 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Lele53g1048 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 165 IPR045174 GO:0003700|GO:0006355
Lele53g1048 338 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Lele53g1048 338 MobiDBLite consensus disorder prediction 274 323 - -
Lele53g1048 338 MobiDBLite consensus disorder prediction 287 323 - -
Lele53g1048 338 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1048 Lele-ChrLele53 19792324 19793340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1048 36 338 C2C2-Dof Transcription Factor Family AT5G65590 41.463 1.04e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele53g1048 zf-Dof 1.3e-32 No_clan