Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0813 ATGTCGACACGTGTCGCCCTATCGAGGCTGTCACTTGCTGCTTCTTCAAAAGACAACCCCTACTCCAAGATTCTTCCCACCTCCAAAACTACCCCTCTAACTTCTCATAACTACAAAGATGCTCACCCTGGGAGGCACGAATTGTCAAGGAATGAACTCACCTCAGTACACGATAATGATGCCTCCTATCAAAGCACAGAGGATTTAAAATCTCCCTCGGCATCTTCAGGCATTTTTGAGAATCCTAAGACTCCCTCAGCAGAAAGAGAGACTTCTTTACTCAAATCTGCTAAACATGGAGAACAAAGTGAGACGAGCAATTTAGAAGAAAAAACTCCGAAAAAACCAGACAAGATACTTCCCTGTCCGAGATGCAATAGCACGGATACCAAATTCTGTTATTTTAACAATTACAATGTCAATCAGCCCCGTCATTTCTGTAAGAACTGCCAGAGATACTGGACAGCTGGAGGAACCATGAGAAATGTGCCTGTAGGCGCAGGTCGCCGCAAGAACAAAAACCCTTCGGCTTCTCAGTACCGTCAAATAATGGTTCCAAAGACCCTTCAGATTGCCAAAGAAAACTCTACCAATGGATTGCGCAATGCTTTTTTAGGAAATAGAGCAGCTGTCTTGACCTTTGGCTCAGATTCTCCTCTTTGTGATTCCATGGCGTCTGTGTTAAACCTTGCAGAGAAAACACAGAATGGTGCTCTAAATGAGTTTCATTTACCCGACCAAAATAATTTTGTCTCTTATGGTAGAGAAGATAATGGGAATGATCACTCCGTTGGAGCATCTGGTACAGCTCCAACTTCTTCAGAGAGGAAAAACAACACTGCTTCACAAGAACCTGTGAATAACATTAGTCATGGTTTCCCTCCTCAATTGCCATGCTTCCAAGGTTCCTCATGGCCTTATCAATGGAACTCAGTGCAGTGGAGTTCTCCGGTCCCTCCTCCCGGATTCTGTCCTCAAGGCTATCCAGCATCAATCTATCCCAATCCTATGTATTGGGGTTGTGCTTTACCAGCTTCGTGGAGCATACCATCCATATCTGCACAATCATCTTCTGTGAGCCAATCAGCCCCTAGCTCTGGCCCTAGTTCACCTTCTCTTGGAAAACACTCGAGGGAAGGGAACATTATCAACCAAGTCAACTTGCCAAAAGAAAATCCTAAAATGGAGAGTGGCAATTCAGAAAGCCGTGTCTTGATTCCAAAGACTCTACGAGTTGATGATCCCAATGAAGCCGCGAAGAGTTCTATATGGTCAGCATTAGGGATGAAGAATGAGAAGCCCACTTCTCTGAATGGAGGAGGCCTTTTCAAGGCATTTCCTGCAAAGAGGGATGACAAGAACCATGTGGTTGAACCATCACTGGTGTTGCAAGCCAACCCGGCAGCTTTATTGCGATCTCTTACTTTCCATGAGCAGATTTAA 1443 0.4477 MSTRVALSRLSLAASSKDNPYSKILPTSKTTPLTSHNYKDAHPGRHELSRNELTSVHDNDASYQSTEDLKSPSASSGIFENPKTPSAERETSLLKSAKHGEQSETSNLEEKTPKKPDKILPCPRCNSTDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNPSASQYRQIMVPKTLQIAKENSTNGLRNAFLGNRAAVLTFGSDSPLCDSMASVLNLAEKTQNGALNEFHLPDQNNFVSYGREDNGNDHSVGASGTAPTSSERKNNTASQEPVNNISHGFPPQLPCFQGSSWPYQWNSVQWSSPVPPPGFCPQGYPASIYPNPMYWGCALPASWSIPSISAQSSSVSQSAPSSGPSSPSLGKHSREGNIINQVNLPKENPKMESGNSESRVLIPKTLRVDDPNEAAKSSIWSALGMKNEKPTSLNGGGLFKAFPAKRDDKNHVVEPSLVLQANPAALLRSLTFHEQI 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0813 480 Pfam Dof domain, zinc finger 117 174 IPR003851 GO:0003677|GO:0006355
Lele53g0813 480 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Lele53g0813 480 MobiDBLite consensus disorder prediction 357 379 - -
Lele53g0813 480 MobiDBLite consensus disorder prediction 14 120 - -
Lele53g0813 480 MobiDBLite consensus disorder prediction 250 293 - -
Lele53g0813 480 MobiDBLite consensus disorder prediction 39 54 - -
Lele53g0813 480 MobiDBLite consensus disorder prediction 14 37 - -
Lele53g0813 480 MobiDBLite consensus disorder prediction 55 91 - -
Lele53g0813 480 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Lele53g0813 480 PANTHER CYCLIC DOF FACTOR 2 58 479 IPR045174 GO:0003700|GO:0006355
Lele53g0813 480 MobiDBLite consensus disorder prediction 92 118 - -
Lele53g0813 480 MobiDBLite consensus disorder prediction 250 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0813 Lele-ChrLele53 17925726 17931515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0813 90 478 C2C2-Dof Transcription Factor Family AT5G39660 42.394 1.52e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele53g0813 zf-Dof 1.4e-31 No_clan