Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0108 ATGATTCAAGAACTGTTGGGTGGTTCTTCTGGTTTTATATCATCTGGAGATAGGAAAATCTCCATTAAAGCAGCTTCTGTTCTTGCGCCTCCCTTACCATCTCCTTCTCTGCCTTCTTCTGCCGCCGCCGCTACCACCTCTGGTGGTGGAGCTGCTGGTAATACCGCCGCCGCCACCTCGTCGAATTCAGAGAACCAGAACTTGAGGTGTCCTCGATGCGATTCGTCGAACACGAAATTTTGTTACTACAACAACTACAATCTCACCCAGCCTCGCCACTTCTGCAAGACATGTCGCCGGTACTGGACAAAAGGAGGTGCTCTGAGAAACGTTCCAATCGGAGGTGGTTGCAGGAAAAATAAGACCGTCAGCGCGTCGTCCAACTCCGTGGCGGCGAAGGCGAGTGTGGGTGGGGCTAAGATGAAAACGGTAGTGTCTGAGCTTGGAAGTAGGTCATCAGGACTTGGCGGCGGCGTCTTCGATCATCAGGAACTTCCGGCAAGCCCAATTTTGTGGGGGTCGCCGCAAAATTCTCATGTGTTGGCTTTGCTGAGAGCTAGTCAGAACCATAACTATAACCCTAACCCTAGCCCTTGTCCGAACAATCCCATACCTAATATTGCTATGACCATGAAGGAAGAAGGGAACTTGATAAGATCCCACATGGTGACTGAACCAATGGGCTCTAATGGCCTTCTGAATAATGTTCCTCCAACCTCAGGCTTTGATCCTTCACTTGGTCTCACGAGCTCTTTCTGGAGAAACAACAATCTCGATCATCATCATCAGCCAGCAGCCCATCATCATCAACCACAAAATGGAGGATTTGCATTCGGCGGCGAGCACCAAAACAGTGGGATCCAAGAGCTCTACCAGAGACTCAGGTCTTCATCTTCTTCAGCTAACTATTGCAGTGACGACTCTTCATCGCTCTTTCTGAGCAACAACATGGCTTCTTCTTCTTCTTCATCATCATCTTCCTCTGTGGCCATTGTGGATTCAACTGCTACTCCAGCTAATCATGGGAGTGGAATTGGATTGGGGTACTGGAATCAACCTCTTTTCTGGTCTGATCTTCCAACGACCAATGGTGCACTTCCGTAA 1104 0.4918 MIQELLGGSSGFISSGDRKISIKAASVLAPPLPSPSLPSSAAAATTSGGGAAGNTAAATSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKTVSASSNSVAAKASVGGAKMKTVVSELGSRSSGLGGGVFDHQELPASPILWGSPQNSHVLALLRASQNHNYNPNPSPCPNNPIPNIAMTMKEEGNLIRSHMVTEPMGSNGLLNNVPPTSGFDPSLGLTSSFWRNNNLDHHHQPAAHHHQPQNGGFAFGGEHQNSGIQELYQRLRSSSSSANYCSDDSSSLFLSNNMASSSSSSSSSSVAIVDSTATPANHGSGIGLGYWNQPLFWSDLPTTNGALP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0108 367 MobiDBLite consensus disorder prediction 38 68 - -
Lele53g0108 367 Pfam Dof domain, zinc finger 66 122 IPR003851 GO:0003677|GO:0006355
Lele53g0108 367 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Lele53g0108 367 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Lele53g0108 367 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 58 297 IPR045174 GO:0003700|GO:0006355
Lele53g0108 367 MobiDBLite consensus disorder prediction 36 68 - -
Lele53g0108 367 MobiDBLite consensus disorder prediction 255 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0108 Lele-ChrLele53 780545 781648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0108 68 127 C2C2-Dof Transcription Factor Family AT5G60200 80.000 4.19e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele53g0108 zf-Dof 2.9e-32 No_clan