Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0960 ATGTCAGCTCCGTCGGTGATGACGAAAGACGATAGCCAGGGCTCAGGCGGCGGCCGGAAGAGCAACTCGGCTACGGCGGGGAGGCAGTTAGAGCAAGGGCTAAAGTGCCCGAGATGTGACTCGGCCAACACTAAATTCTGTTACTACAATAATTACAGCTTGACTCAGCCGAGGTATTTCTGCAAGACTTGTCGTAGATACTGGACAAAAGGTGGAGCCTTGCGTAACGTTCCGATTGGCGGCGGTTGCCGGAAGAACAAGAAACTGAAATCATCATCGTCATCCTCAAGACTCTCAAATGACGGTGGTTTCTCCCCTTCTTTGAATTTTCACCTCGGGGGTGGCGCCACCGCCGCTAGCTTCTTACCCTTCCCTAGGCTCAACGATCATCATCCTCCAGCTTTCAACCTTGAAGGAACCTCAAGTTCTTTCAATATTGGATTTAATAATTACCCACTTCACGGTGGTTTGATTCAAGGCATGAGCTCAATGAACATTCAGAGTAGCCTTGCTTCTTCGATTGAGTCTCTGAGCTCTATAAACCAAGACCTGCACTGGAAGCTGCAACAGCAGAGACTAGCGATGCTGTTCGGAGGGGATAGTACTACTGCTGATGCTGATAGTAGTCTAAAAGATATAAACCGACCCGTTTCAGCGATCAATCTCGAGAACCAGAGTCATGATGATCATCAGAAATCAGTACCACACCCTATATTGTTTCAGAACCTTGAGATTTCGAAGCCTGAAGAGATCTGTCCTGTGGTCGGAAATTTGAGAAGAGATACAGCCACAGAGTGGTTCTTCGGTAGCTCATATGATTCAGTGACTCCAACGCCAACAACTACAAGCAGTGGTGGTGGTGGAGGTAATGGGAATGATAATAATGGAAGCAGTAACTGGAGTCTTCAAGCTGGCTGGGGGGATGTGCAGCAGCAATACAGTGATTTGCCCTAG 954 0.4822 MSAPSVMTKDDSQGSGGGRKSNSATAGRQLEQGLKCPRCDSANTKFCYYNNYSLTQPRYFCKTCRRYWTKGGALRNVPIGGGCRKNKKLKSSSSSSRLSNDGGFSPSLNFHLGGGATAASFLPFPRLNDHHPPAFNLEGTSSSFNIGFNNYPLHGGLIQGMSSMNIQSSLASSIESLSSINQDLHWKLQQQRLAMLFGGDSTTADADSSLKDINRPVSAINLENQSHDDHQKSVPHPILFQNLEISKPEEICPVVGNLRRDTATEWFFGSSYDSVTPTPTTTSSGGGGGNGNDNNGSSNWSLQAGWGDVQQQYSDLP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0960 317 MobiDBLite consensus disorder prediction 1 29 - -
Lele49g0960 317 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Lele49g0960 317 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Lele49g0960 317 MobiDBLite consensus disorder prediction 269 317 - -
Lele49g0960 317 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Lele49g0960 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 189 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0960 Lele-ChrLele49 6052438 6053391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0960 1 301 C2C2-Dof Transcription Factor Family AT5G65590 36.842 7.29e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele49g0960 zf-Dof 3.4e-33 No_clan