Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0566 ATGGTCTTCTCTTCCATTCCAGTCTTCCATCTAGATCCACCACCCAATTGGCCTCACCACCAGCAACTTGATCCACAGCCAGAAGGAGGACTGATTCATGCCCAGAATTCCCAGGTTCCTCCTCCTCCGCCACCACCGGTTGCTGATGCCGGTGGTGGTGACAAAGGCTCGACGACGAGGTCAGGATCCATGGCGGATCGAGCTCGGCTAGCGAAGATAGAACAGCCTGAAGCAGCAGTGAAATGTCCACGGTGTGAATCAACCTACACCAAGTTCTGTTACTACAACAATTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACTTGCCGGCGATACTGGACCCGAGGCGGCGCGTTGAGAAATGTCCCTCTCGGAGGAGGTTGCAGAAGGAAGAACAAAAGAAGCAAAGGAACTAACATCAAATCATCAAAATCTCCCAACAAAGCAACATCAGGTTCCATTATTTCCAACTCTTCTGTAAGTGCAAATAATTCCTCAAGTAAATGTTGCCCTAGTAGTGATCATCATCACTTGATAGGTCATCACTTACCATCTCCATTACTCTTCCCTCCTCCTCCGACTACTACATCTCATAGTTACAGTGACTACGACATCGTTTTTGGGGCAACAAACATCTATCATGATCCTGAATTTCAAATTGCTTGTAATAACAATAATGGGTTTATTACTACAACTGAGCCATGGAAGCTACCAAGTCTTCTGCAGCAGCATCAACAATTTCCAGCAACATTCATGAGTAATCTTGAGGCACCAGTAGGGTTATATCATCAGTTTCAAAGATCAGAAAATGTTGATATCGAACCTTCTTCAACGAAATTATTATATTCTGCTGGTGATCATCATCTTCCTCATCGTCAGCTTACTGCTACTACAGTTAAAAGGAAGAAAAATATGGATCAAGTTGTGGGATTATCCAAGACTCTTACGGGTAACTCAGAAAATAATAATAATGACCAACTCTGGGAATTAGCAAATAATAGTGGCGGCAGTGCATGGAATAGCAATAATAATAATGTTTCTGTTAGTTTCGCTTCTTCTTCTTCCATCACCCATCTCCTGTGA 1086 0.4392 MVFSSIPVFHLDPPPNWPHHQQLDPQPEGGLIHAQNSQVPPPPPPPVADAGGGDKGSTTRSGSMADRARLAKIEQPEAAVKCPRCESTYTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPLGGGCRRKNKRSKGTNIKSSKSPNKATSGSIISNSSVSANNSSSKCCPSSDHHHLIGHHLPSPLLFPPPPTTTSHSYSDYDIVFGATNIYHDPEFQIACNNNNGFITTTEPWKLPSLLQQHQQFPATFMSNLEAPVGLYHQFQRSENVDIEPSSTKLLYSAGDHHLPHRQLTATTVKRKKNMDQVVGLSKTLTGNSENNNNDQLWELANNSGGSAWNSNNNNVSVSFASSSSITHLL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0566 361 MobiDBLite consensus disorder prediction 125 160 - -
Lele48g0566 361 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Lele48g0566 361 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Lele48g0566 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 271 IPR045174 GO:0003700|GO:0006355
Lele48g0566 361 MobiDBLite consensus disorder prediction 13 66 - -
Lele48g0566 361 MobiDBLite consensus disorder prediction 140 160 - -
Lele48g0566 361 Pfam Dof domain, zinc finger 79 134 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0566 Lele-ChrLele48 5479013 5480317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0566 38 351 C2C2-Dof Transcription Factor Family AT3G55370 37.618 3.69e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele48g0566 zf-Dof 1.6e-30 No_clan