Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0012 ATGGGCCTTGCTCGGTTATTACTGCTAATCATACTCGGTGTCGCCGCCGCATCATGGGTAGCGGTGGAGGCTCAGCCAGAGGCAAGATTCAAATGCAGCTCGGCAGGTAAAACGTGTCGTTCACTGGTGGATTATTCGTCCCCAAACGAAACCACCTTGGGCCACATTCGAAAGCTCTTCAACTTGAAGCACGTTCTGGACATAGTGGGAGCCAACGCCATCCCCTCCACCACCCGAGGCAACCAAACCGTTGAAAAGGGCGCCATTATTAAAATCCCCTTTCAGTGCAAGTGCTCCAACGGCACCGGCTTGTCCAACAAGACGCCTCTCTACACCATCCAGAAAGGTGACACGCTTTCCCACATAGCCATGGAAGTGTTCTCGCGTTTGGTCACTTACCAACAACTCCAAACACTCAACAACATATCCGACGCCACAAAAATTCAGCCCGGCCAGAAGGTGTGGATCCCTCTCCCTTGCAGCTGCGATCAGGTGGACGGCACCGATGCCGTCCACTATGGACATCTCGTGGCTATGGGGAGCTCCTTTCAGCAGATTGCTCAACAATATGGCACCACCCAGGATACCCTTCTCAACCTCAACGGCATTTCTGACCCTAAGTCCCTTCAAGCCGGTCAAATCATCGATGTCCCCCTCAAAGCTTGTTCCTCATCGACGGTGAAAAATGGCTCCTTGGACTACCCTCTGCTCGTTGCAAATGGTACCGACACCTACACCGCCAATGGTTGCGTCAAGTGCAGCTGTGACTCCGCCGCCAATAACGCCACATTACAATGTGAGCCATCGCAAGTTAAACCATATAGATGGGATACATGCCCCTCTATGCTATGCGGAAATTCAACCATTGGCACCATCACTTCCACAGATTCCTGCACTCGCACCATCTGTGCTTACGCTGGTTACGACAACCAAAACCAGACTATTTCCACCGCTCTTGTCAACGAGTCCACTTGTCCTGCGCCAACAGGATCAGGGGCATCCAGGATCGGCTTGCAAGTCTGGGGTTGGAATCATCTTTTGATGCCCCTTCACTTTATCTTCTTTAGCGTCTATCTTTTGTAG 1083 0.5189 MGLARLLLLIILGVAAASWVAVEAQPEARFKCSSAGKTCRSLVDYSSPNETTLGHIRKLFNLKHVLDIVGANAIPSTTRGNQTVEKGAIIKIPFQCKCSNGTGLSNKTPLYTIQKGDTLSHIAMEVFSRLVTYQQLQTLNNISDATKIQPGQKVWIPLPCSCDQVDGTDAVHYGHLVAMGSSFQQIAQQYGTTQDTLLNLNGISDPKSLQAGQIIDVPLKACSSSTVKNGSLDYPLLVANGTDTYTANGCVKCSCDSAANNATLQCEPSQVKPYRWDTCPSMLCGNSTIGTITSTDSCTRTICAYAGYDNQNQTISTALVNESTCPAPTGSGASRIGLQVWGWNHLLMPLHFIFFSVYLL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0012 360 Gene3D LysM domain 167 231 IPR036779 -
Lele48g0012 360 SUPERFAMILY LysM domain 110 158 IPR036779 -
Lele48g0012 360 SUPERFAMILY LysM domain 174 218 IPR036779 -
Lele48g0012 360 Gene3D LysM domain 105 166 IPR036779 -
Lele48g0012 360 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 6 328 - -
Lele48g0012 360 CDD LysM 111 156 IPR018392 -
Lele48g0012 360 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Lele48g0012 360 CDD LysM 180 217 IPR018392 -
Lele48g0012 360 ProSiteProfiles LysM domain profile. 173 217 IPR018392 -
Lele48g0012 360 SMART LysM_2 174 218 IPR018392 -
Lele48g0012 360 SMART LysM_2 110 157 IPR018392 -
Lele48g0012 360 Pfam LysM domain 111 157 IPR018392 -
Lele48g0012 360 Pfam LysM domain 177 218 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0012 Lele-ChrLele48 821111 822463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0012 9 311 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 47.039 2.47e-90 273