Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0945 ATGAGGAGCGATATCCAGTTTCTATTAGGCCTCGCGCTCTTCAGCATTCTCTGCCTCGTTCAAACCAAATCCATCATCGAACCTTGTTCCTCCTCTGACTCCTGTTTCTCCCTTCTCTCCTTTGTCGTCCCCTGGGACTCCAAGCTCTCTGAAATCGCCTCACGATTCCAAGTGAATGTCTCCGACATCCTCGCCGCCAACTCAGTTTTCCCAATATCACAGAAACTCTCCGATCAAATCATCAGATCCAAATCCGTCGTGAAGATCCCCATCTCGTGCGGTTGCGTCGACGGAATCCGAAGATCTAAGTTCATAATGTACACGGTGCAAGCATCGGACACATTGGAGACCATATCGGAGGGATTCGGCTGGCTGGTGACCGCAGACCAAATAGCGACGGGGAACAGCATAAATGCGACGAATCGCTTAACGAACGGAGGGAGGTTGGTGATATCGTTGCCGTGTACGTGCTTGAATAATGTGAGGAACGGTGAAACGACAGTTTATATGTCGTATGCGGTGAGAGAGGGAGAGAGCTTGAGGGGTATAGCGTCGGGTTCAAAAACGACAGTGTCGGATTTGGAAGCTGTCAATGGATTGAGTCACGACGCCGTCGAACCAGGAGATATCATTGCCATTCCCATTGCAGCATGTTCATCAGCAACACTTAATTGGTACAACGAGAGTCTCATTGTCCCAAATGGCTCATACGCTCTTACTGCCTCTGACTGCATCAAATGCTCCTGTGGCCCTATTGATCTCAGGCTGCAATGTTATCCATCTGGTCTACCGGTTCCCTGCTTCAACTTACAATGCAAGGATTCCAATCTTGTAATTGGCGACCGACATGTCACGTATTCCAAACCAGGTTGTAATGTCACTCAGTGTCTTTATCGTGGCCACAGAGGTGGCAAGATTCTCAAAAGTGTGTCGAGCACTTCTTATCTCAAGTGCCCGGAAAATCTGACTTATATTGCAGAATCTCCTTGGCCATCAATAAATTATTTAAATCCTGCAATAGTGCCATTTGGGGAACTGTCTCCATATCCCTCACCTAGTCCTGTTTCTGATGCTTCCATGCACACCACTCAAGTTTCAATCATCAGCTTGCTCCTATTTCTCCTTTGA 1128 0.4778 MRSDIQFLLGLALFSILCLVQTKSIIEPCSSSDSCFSLLSFVVPWDSKLSEIASRFQVNVSDILAANSVFPISQKLSDQIIRSKSVVKIPISCGCVDGIRRSKFIMYTVQASDTLETISEGFGWLVTADQIATGNSINATNRLTNGGRLVISLPCTCLNNVRNGETTVYMSYAVREGESLRGIASGSKTTVSDLEAVNGLSHDAVEPGDIIAIPIAACSSATLNWYNESLIVPNGSYALTASDCIKCSCGPIDLRLQCYPSGLPVPCFNLQCKDSNLVIGDRHVTYSKPGCNVTQCLYRGHRGGKILKSVSSTSYLKCPENLTYIAESPWPSINYLNPAIVPFGELSPYPSPSPVSDASMHTTQVSIISLLLFLL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0945 375 ProSiteProfiles LysM domain profile. 105 151 IPR018392 -
Lele47g0945 375 CDD LysM 107 151 IPR018392 -
Lele47g0945 375 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 320 - -
Lele47g0945 375 CDD LysM 171 213 IPR018392 -
Lele47g0945 375 Gene3D LysM domain 101 160 IPR036779 -
Lele47g0945 375 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Lele47g0945 375 Pfam LysM domain 49 90 IPR018392 -
Lele47g0945 375 Pfam LysM domain 172 214 IPR018392 -
Lele47g0945 375 Pfam LysM domain 107 151 IPR018392 -
Lele47g0945 375 Gene3D LysM domain 161 224 IPR036779 -
Lele47g0945 375 SUPERFAMILY LysM domain 170 214 IPR036779 -
Lele47g0945 375 SMART LysM_2 49 90 IPR018392 -
Lele47g0945 375 SMART LysM_2 106 152 IPR018392 -
Lele47g0945 375 SMART LysM_2 171 214 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0945 Lele-ChrLele47 15518698 15521443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0945 8 319 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 43.175 7.13e-77 241