Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1398 ATGCTTAGAAAACGAACCACTCAAAGTCGAATAAAATCTGAACAAGTTGCATCAGATATCCTTGATCAGCCTTCGTTGATGAATTTCTCAGAAATCTCTGGGAGTGGTGAAAGCCCAACAGAGATGAGTACAGCTGGGAAGCTCATTTCTTCTAGTTCTGAATCGGACCTTGATCGGCCCAATATTGAAGATTACCTCCCATCTGGGTCCACCATTCAACAAGAACCTCATGGGAAGCTGTGCCTGCATGACTTACTCAACATTTCTCCTACTTTATCCGAGGCAGCTGGTGCCATCTTAGATGGACATGACAACCTATTGAAGGGACATGACAAGTTGAGGAAAAAGATCGAGCGGTCTTTGGTGGAGATGATGTGCAGTTTTTTTGTTGCATCGTGGACTGGGGTTGTCAAATATCATGGGCCACGGCCTAGCATAAGACCAAAGCATGTTTTTGTGGCCAACCATACTTCCATGATTGATTTCATTATTTTAGAACAGATGACTGCATTTGCTGTAATTATGCAAAAGCATCCTGGATGGGTTGAATTGGTAGCCCATTGTCATTTGCCCAGTTGCAATAAAATATTTGTGGATGCTTTTTGGAATAGTCGAAAGCAATCATTCACCATGCATCTGTTACAGCTAATGACATCCTGGGCTGTTGTTTGTGATGTTTGGTACTTGGAGCCCCAGAATCTGAAGCCAGGAGAAACAGCCATTGAGTTGGCTGAGAGGGTGAGAGACATAATCTCAGTTCGAGCTGGCCTTGAAAAGGTTCCTTGGGATGGATATCTGAAGTATTCTCGTCCTAGCCCAAAGCTGAAAGAAGGAAACCTCTTGACTAGCACCCCATATGACATCTTCACCATCTGCTCTTTTCGTCTCTGGAGTTCATCTCAATCTGTATCTACTCTGACGCCTCTCATTTGCGGCTCATCTTCAAGTTTTACCATCTCGAATTTTCAAAAGTCGCACTTGCAACTGGAGCTTGAGCTCATCACCCGTGGTTCCTTTTACATTTCCGAAGTTTCAGCTCCTTTCCAAGTCGTTGGCCGAAAAAGCTCCTTTCAAAGTCTTTCTCTCAGTTCCTCACTTAGATCCCGTTTGGATTGGGGCTGCGTCTTCCCTGGGGCAACCCATTCGCAATTAATTATATCAATCTTCGTAGATTATCTCATCCGCCCTGGAAAGGTTGAGGCAGAAATGGGCCTTGCTCGGTTATTACTGGTAATCGTATTTGGTATCGCCGCCGCATCATGGGTGGTGGTGGAGGCTCAGCCAGAAGCGAGGTTCAAATGCAGCTCGGTAGGTAAAACGTGTCGTTCATTGGTGGATTATTCGTCCCCAAACGAAACCACCTTAGGCCACATTCAAAAGCTCTTCAACTTGAAGCACGTTCTGGACATAGTGGGTGCCAACGCCCTCCCCTCCACCACCCGAGGCAACCACACCGTTGAAAAGGGCGCCATTATTAAAATCCCCTTTCAGTGCAAGTGCTCCAACGGCACCGGCTTGTCCAACAAGACGCCTCTCTACACCATCCAGAAAGATGACACTCTTTCCCACATAGCCATGGAAGTGTTCTCGCGTTTGGTCACTTACCAACAAATCCAAACGCTCAACAACATATCCGACGCCACAAAAATTCAGCCTGGCCAGAAGGTGTGGATCCCTCTCCCTTGCAGCTGCGACCAGGTGGACGGCACCGATGCCGTCCACTATGGACATCTCGTGGCTATGGGGAGCTCCTTTCAGCAGATTGCTCAACAATACGGCACCACCCAGGATACCCTTCTCAACCTCAACGGCATTTCTGACCCTAAGTCCCTTCAAGCCGGTCAAATCATCGATGTCCCCCTCAAAGCTTGTTCCTCATCGACGGTGAAAAATGGCTCCTTGGACTACCCTCTGCTCGTTGCAAATGGTACAGACACCTACACCGCCAATGGCTGCGTCAAGTGCAGCTGTGACTCCGCCTCCAATAACGCCACATTACAATGCGAGCCATCGCAAGTTAAACCATATAGATGGGAAACATGCCCCTCTATGCTATGCGGAAATTCAACCATCGGCACCATCACTTCCACAGATTCCTGCAGTCGCACCATCTGTGCTTACGCTGGTTATAACACCCAAAACCAAACTATTTCCGCCGCTCTTGTCAACGAGTCCACTTGTCCTGCACCAACAGGATCAGAAGCATCCAGGATCAGCTTGCAAGGCTGGGGTTGGAATCATCTTCTGATGGCCCTTCACTTTATCTTCTTTTGTGTCTATCTTTTGAGCACTAGTTTTAGCAGTGCCATGTTCTGGATGCAACTCAGACCAGAATCTGAATTTATGGATAATTTAAACACAATGCGAGACAGCCATGAGTTTGATGATTGTGTTCACTGTTCAGTCACGAATAATTCTAACTCTTGCCACTATTCGTAA 2439 0.4707 MLRKRTTQSRIKSEQVASDILDQPSLMNFSEISGSGESPTEMSTAGKLISSSSESDLDRPNIEDYLPSGSTIQQEPHGKLCLHDLLNISPTLSEAAGAILDGHDNLLKGHDKLRKKIERSLVEMMCSFFVASWTGVVKYHGPRPSIRPKHVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVELVAHCHLPSCNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQNLKPGETAIELAERVRDIISVRAGLEKVPWDGYLKYSRPSPKLKEGNLLTSTPYDIFTICSFRLWSSSQSVSTLTPLICGSSSSFTISNFQKSHLQLELELITRGSFYISEVSAPFQVVGRKSSFQSLSLSSSLRSRLDWGCVFPGATHSQLIISIFVDYLIRPGKVEAEMGLARLLLVIVFGIAAASWVVVEAQPEARFKCSSVGKTCRSLVDYSSPNETTLGHIQKLFNLKHVLDIVGANALPSTTRGNHTVEKGAIIKIPFQCKCSNGTGLSNKTPLYTIQKDDTLSHIAMEVFSRLVTYQQIQTLNNISDATKIQPGQKVWIPLPCSCDQVDGTDAVHYGHLVAMGSSFQQIAQQYGTTQDTLLNLNGISDPKSLQAGQIIDVPLKACSSSTVKNGSLDYPLLVANGTDTYTANGCVKCSCDSASNNATLQCEPSQVKPYRWETCPSMLCGNSTIGTITSTDSCSRTICAYAGYNTQNQTISAALVNESTCPAPTGSEASRISLQGWGWNHLLMALHFIFFCVYLLSTSFSSAMFWMQLRPESEFMDNLNTMRDSHEFDDCVHCSVTNNSNSCHYS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1398 812 SUPERFAMILY LysM domain 576 620 IPR036779 -
Lele45g1398 812 ProSiteProfiles LysM domain profile. 511 558 IPR018392 -
Lele45g1398 812 MobiDBLite consensus disorder prediction 27 60 - -
Lele45g1398 812 Gene3D LysM domain 507 565 IPR036779 -
Lele45g1398 812 CDD LysM 582 619 IPR018392 -
Lele45g1398 812 MobiDBLite consensus disorder prediction 27 56 - -
Lele45g1398 812 SMART LysM_2 512 559 IPR018392 -
Lele45g1398 812 SMART LysM_2 576 620 IPR018392 -
Lele45g1398 812 CDD LPLAT_LPCAT1-like 125 268 IPR045252 GO:0008374
Lele45g1398 812 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 409 730 - -
Lele45g1398 812 Pfam LysM domain 579 620 IPR018392 -
Lele45g1398 812 Pfam LysM domain 513 559 IPR018392 -
Lele45g1398 812 SUPERFAMILY LysM domain 512 560 IPR036779 -
Lele45g1398 812 ProSiteProfiles LysM domain profile. 575 619 IPR018392 -
Lele45g1398 812 CDD LysM 513 558 IPR018392 -
Lele45g1398 812 Gene3D LysM domain 566 633 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1398 Lele-ChrLele45 23471772 23480249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1398 416 717 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 47.855 9.65e-86 275