LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele42g1075	ATGCCCTCATACTCTTTCTATGAGAAATTATGTGATTTCACGAAGGACATTGCTATTGTTTTGAAATTTTGTGATGAAACAGGAGCTATAGAAAAGAGTTTGGAAGTTTTTCATTTCTTGATGGAAGCACAAAACTCGTGGGATTCACAAGTTATTGAAGTTCGTGGACACACCTCTGATGGTGGAAGGGCTCTTGGAGGAAGTAAGGTTTGTGGGGAAGCACCATGTGGGTTCTCAGACGCTGGATCCATCTCCAGGGATTCCAAAGAACGATCGACTTCGATGCGAAAACTTCTGACGGCAGTGATTCTTTGTGTTGTTTTCATGAGCATTGAAGTTGTTGGGGGGATCAAAGCTAATAGTCTTGCAATATTGACTGATGCAGCACACTTGCTTTCTGATGTTGCATCCTTTGCCATCTCATTATTCGCTTTGTGGGCTGCCGGATGGGAAGCCACCCCTCGTCAGTCATATGGATTTTTCAGGATAGAGATTCTCGGAGCCTTGGTTTCTATCCAACTAATATGGTTGCTTACAGGGATTCTAGTCTTTGAAGCCATTCAAAGACTCATGGCTGGTACTAAAGAGGTTAATGGCCTATTAATGTTTCTGGTTTCTGCATTTGGTCTACTGGTTAACATTATCATGGCTCTTTTATTGGGTCATGATCATGGACATGGACATGGACACGGGCATGGACATGATCATGGTCATGACCATGGATCTGTAGTTTCTACCCATCACCACCACCATCATGATGAAGAACATTCAAGAGATAAGCCCCATCATCATCATAGGCATGACAATGTCAGTGAACCACTTCTCAATGGATCGAAAGAAGGACCTGCAGAGGAGAAGAAAGAACGAAGCATTAATGTGCAAGGGGCTTATCTCCATGTGCTAGGGGATAGTATCCAAAGTGTTGGGGTAATGATTGGAGGAGCAATCGTTTGGTACAAACCCGAGTGGAAAGTGGTTGACTTGATTTGCACGCTAGTATTCTCGGTGATTGTTTTGGGGACGACGATCAATATGCTGCGAAGCATACTGGAAGTCCTGATGGAGAGCACGCCAAGAGAGATAGATGCAACAAAACTTAAACAGGGGCTGCTGGACATGGATGAAGTTGTGGCTGTTCATGAGTTGCATATATGGGCCATTACAGTTGGTAAAGTTTTACTGGCTTGTCATGTGAAAATTAGACCAGATGCTGATGCAGACTTAATGTTGGATAAGGTTGTAGATTATATCAAAAGGGTCTACAACATAAGTCATGTGACCATTCAGATAGAGCGCTAG	1299	0.4326	MPSYSFYEKLCDFTKDIAIVLKFCDETGAIEKSLEVFHFLMEAQNSWDSQVIEVRGHTSDGGRALGGSKVCGEAPCGFSDAGSISRDSKERSTSMRKLLTAVILCVVFMSIEVVGGIKANSLAILTDAAHLLSDVASFAISLFALWAAGWEATPRQSYGFFRIEILGALVSIQLIWLLTGILVFEAIQRLMAGTKEVNGLLMFLVSAFGLLVNIIMALLLGHDHGHGHGHGHGHDHGHDHGSVVSTHHHHHHDEEHSRDKPHHHHRHDNVSEPLLNGSKEGPAEEKKERSINVQGAYLHVLGDSIQSVGVMIGGAIVWYKPEWKVVDLICTLVFSVIVLGTTINMLRSILEVLMESTPREIDATKLKQGLLDMDEVVAVHELHIWAITVGKVLLACHVKIRPDADADLMLDKVVDYIKRVYNISHVTIQIER	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele42g1075	432	SUPERFAMILY	Cation efflux protein transmembrane domain-like	92	355	IPR027469	-
	Lele42g1075	432	PANTHER	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	52	432	-	-
	Lele42g1075	432	MobiDBLite	consensus disorder prediction	227	288	-	-
	Lele42g1075	432	Gene3D	Cation efflux protein transmembrane domain	94	353	IPR027469	-
	Lele42g1075	432	SUPERFAMILY	Cation efflux protein cytoplasmic domain-like	360	431	IPR036837	-
	Lele42g1075	432	TIGRFAM	CDF: cation diffusion facilitator family transporter	95	432	IPR002524	GO:0006812\|GO:0008324\|GO:0016020\|GO:0055085
	Lele42g1075	432	Pfam	Cation efflux family	98	354	IPR002524	GO:0006812\|GO:0008324\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele42g1075	Lele-ChrLele42	23218218	23220108	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele42g1075	41	432	Inorganic Solute Cotransporters	AT2G46800	71.106	0.0	526