Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0919 ATGCAAGACTCAGCATTATTTCAGTCCATGAAAAGCCATGGATTTCCAGAACAAGAACAGGTCAAGTGCCCACGTTGTGATTCCACGAACACCAAGTTCTGCTACTACAACAATTACAACCTCTCGCAACCACGCCATTTCTGCAAGAGTTGCAGAAGGTACTGGACCAAAGGAGGCACTCTCCGCAACATCCCCGTCGGAGGTGGAACCCGGAAGAACAAAAAGCGATCATCCACCAGCGCCAAACGAGTATCTGCAACGTCATCTTCACCATCATCTTCATCTTCTCCGTCGGTTTCGTCGGCCATTGGAGGTGCAGACCCGAGCCGTGTTTCTACCGCCTCGATGGGTGGGGGTTTCAGTTCGCTTCTGGCATCATCATCATCATCTGGGCATCTGGGGAGTGTTCTGGAGGGTCTGAATCCAAATGGGTCGGGTCTGAAAATGGCGGAAGCGGGTGAATTTGGGGCGAATGTGAGTTCTGTTGAACGGGCTGTGGATCCGAGTTCGAAGATGCAGATTAATGGCGTTTCAGAGAGGTTTCCGGGTTTGCAGAATGGTGATTCGAGCTATTGGAATCGCAGTAACGAGTGGTCTAACCTTGCCATGTATGCGCCAGGCTCGAGCTTTCAGTAG 636 0.5126 MQDSALFQSMKSHGFPEQEQVKCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGTLRNIPVGGGTRKNKKRSSTSAKRVSATSSSPSSSSSPSVSSAIGGADPSRVSTASMGGGFSSLLASSSSSGHLGSVLEGLNPNGSGLKMAEAGEFGANVSSVERAVDPSSKMQINGVSERFPGLQNGDSSYWNRSNEWSNLAMYAPGSSFQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0919 211 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Lele42g0919 211 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Lele42g0919 211 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 153 IPR045174 GO:0003700|GO:0006355
Lele42g0919 211 MobiDBLite consensus disorder prediction 80 110 - -
Lele42g0919 211 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Lele42g0919 211 MobiDBLite consensus disorder prediction 62 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0919 Lele-ChrLele42 21930146 21930781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0919 15 175 C2C2-Dof Transcription Factor Family AT1G51700 47.977 6.05e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele42g0919 zf-Dof 9.4e-34 No_clan