Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0985 ATGGTTTTTACTTCAATCCCTCCTTATCTTGATCCAGCCAACTGGCAACAACAGCAAAGTAATCACCCCCATACAGACACTCTCGCCGGCGGGGTGAGCTCTCAGCAGCATCAGCAGCTTCTTTCTCCGCCGCAGCCTCCTCCGCCTTCGCTGCCTCCACCGCAGGCTCATGGAGCGGGAGGGACGGGTTCGATTAGGCCGGGTTCCATGGCTGATCGAGCTCGGATGGCGAACGTACCCATGCCGGAGGCTGCTCTGAAATGTCCCAGGTGTGAATCTACCAACACCAAGTTTTGTTACTTTAACAACTACAGTCTCTCCCAGCCTCGCCACTTTTGCAAGACTTGTCGGAGGTACTGGACCCGTGGCGGCGCGCTGAGGAATGTGCCTGTCGGAGGGGGATGCCGGAGGAACAAGAGAAGCAAACGAAGCAGCTCCAAGTCACCAGCGAGTTCAGATCGCCAAGCTGGGAGCACGAGTTCCACCAACTCAGTTTCTTCTAACAGTAACTCTGCTGGCGACTTAATAGGACTCACCCCTCACGCGCCCCCACTGAGATTTATGTCTCCGTTACTTGCTGATTTCGCTGCTGGTGGAGACATGGGTTTAACCTACGGCGTAAACTATAACGCAATTTCAGCACCAATGGGAGTAGTTGGCGACTTAAACTTCCAAATAGGAAGTGCTTTAGGTGGAGGAGGAGGAGGAAGTGGCGGCACCACCACAGCCGCTGGAAGCGGCAGCGGATCTATCTTATTTGCTCCCGGTCTGGACCAATGGCGGGTGCCACAAACACAGCAATTTCCTTTCTTGGCTGGACTGGAAGGTTCACCTGGATTGTACTCGTTCGAAGGTGGCGCTGCCGGGGTAGAGGGACCAGGATACAGCGGCATGACGAGTCTCCGGCCAAAGGCTACGTCCTCGATGGCTTCCGGGCTGATAACTCAGTTGGCTTCAGTGAAAATGGAAGACAACAATCCGCAGACGATGAATTTATCAAGACAATTCCTGGGAAGTGAGCAGTATTGGGGTACTGGCCATGGTGGTTCTTCTACTTCTGCTTGGACTGATCTTTCTGGATTTAGCTCACCTTCAACTACTAGCAATCCACTATAG 1116 0.5358 MVFTSIPPYLDPANWQQQQSNHPHTDTLAGGVSSQQHQQLLSPPQPPPPSLPPPQAHGAGGTGSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKRSSSKSPASSDRQAGSTSSTNSVSSNSNSAGDLIGLTPHAPPLRFMSPLLADFAAGGDMGLTYGVNYNAISAPMGVVGDLNFQIGSALGGGGGGSGGTTTAAGSGSGSILFAPGLDQWRVPQTQQFPFLAGLEGSPGLYSFEGGAAGVEGPGYSGMTSLRPKATSSMASGLITQLASVKMEDNNPQTMNLSRQFLGSEQYWGTGHGGSSTSAWTDLSGFSSPSTTSNPL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0985 371 Pfam Dof domain, zinc finger 85 140 IPR003851 GO:0003677|GO:0006355
Lele40g0985 371 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677|GO:0006355
Lele40g0985 371 MobiDBLite consensus disorder prediction 148 175 - -
Lele40g0985 371 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677|GO:0006355
Lele40g0985 371 MobiDBLite consensus disorder prediction 130 175 - -
Lele40g0985 371 MobiDBLite consensus disorder prediction 10 40 - -
Lele40g0985 371 MobiDBLite consensus disorder prediction 1 69 - -
Lele40g0985 371 MobiDBLite consensus disorder prediction 41 55 - -
Lele40g0985 371 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 165 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0985 Lele-ChrLele40 20309333 20310680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0985 1 348 C2C2-Dof Transcription Factor Family AT5G02460 42.559 9.23e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele40g0985 zf-Dof 2e-32 No_clan