Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1312 ATGGATGGAATTCCTAATCAGAATTCAGTGACAAAGCCAGTAATGATAGAGAAGAAGGCAAGGCCACAAGAACAATTGAACTGTCCAAGGTGCAATTCAACCAACACCAAGTTCTGCTACTACAACAATTATAGCCTCACGCAGCCCAGATACTTCTGCAAGACTTGTAGAAGGTACTGGACAGAAGGTGGGTCCCTCAGAAACATCCCAGTTGGAGGAGGTTCTAGAAAGAACAAGAACAAGATCATCACTAATTCCTCTTCCTCTTCCTCATCAACCTCATCATCATCGGCATCAAAGGTTCCTGATCTAAATCCACCATTACCGAGTTTGAACCTCTCTCGAGGCCAGATGATGAACCAAAGCTTCCCAATGAATTGTTCTATGTCCACCCAGCAAAGTCCTAAGATCCATGAAGGCCAGGATCTTAATCTGGCTTTTCCCACTTCTTCACTTTCAGCTCCTAGGGTTTTGAATAATAATAGTAATATCCCTTATATTCCTTCATTCATGATGCCAAATAGCTCGTATGGTAACCTTAATTTCCCATCATCTGGGTTTATTCCCATGCAAGAAGAAACTAAACCTAGGCAGCAGCTGGGATTCTCTGTGGATGGGCTTGGAAATAGATCATATGGAGTACAAGAGAATGATCATAATAATGGCGGGAGACTTTTGCTTCCTTTTGGAGGAGTGAAACAGATTCCAGGTGGTGATCAGGAAGTGGAACAAAATAATAAAGAACAAGGGAATTCAAGTGGGTTTTGGACTGGAATGATTGGTGAAGGATCATGGTAA 798 0.4223 MDGIPNQNSVTKPVMIEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKNKIITNSSSSSSSTSSSSASKVPDLNPPLPSLNLSRGQMMNQSFPMNCSMSTQQSPKIHEGQDLNLAFPTSSLSAPRVLNNNSNIPYIPSFMMPNSSYGNLNFPSSGFIPMQEETKPRQQLGFSVDGLGNRSYGVQENDHNNGGRLLLPFGGVKQIPGGDQEVEQNNKEQGNSSGFWTGMIGEGSW 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1312 265 MobiDBLite consensus disorder prediction 239 259 - -
Lele39g1312 265 MobiDBLite consensus disorder prediction 78 103 - -
Lele39g1312 265 MobiDBLite consensus disorder prediction 235 265 - -
Lele39g1312 265 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Lele39g1312 265 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 189 IPR045174 GO:0003700|GO:0006355
Lele39g1312 265 MobiDBLite consensus disorder prediction 1 23 - -
Lele39g1312 265 MobiDBLite consensus disorder prediction 67 115 - -
Lele39g1312 265 Pfam Dof domain, zinc finger 24 80 IPR003851 GO:0003677|GO:0006355
Lele39g1312 265 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1312 Lele-ChrLele39 21553431 21554228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1312 14 265 C2C2-Dof Transcription Factor Family AT3G61850 39.726 9.75e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele39g1312 zf-Dof 6.5e-33 No_clan