Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0248 ATGGTTTTTACTTCAATCCCTCCTTATCTTGATCCAGCCAACTGGCAACAACAGCAAAGTAATCATCACCATACAGGCACTCTCGCCGGCGGTTTGAGCTCACAGCAGCATCAGCATCAGCAGCTTCTTTCTCCGCCGCAGCCTCATGGAGCGGGAGGGACGGGTTCAATCAGGCCGGGTTCCATGGCTGATCGAGCTCGGATGGCGAACATACCCATGCCGGAGGCTGCTCGGAAATGTCCCAGGTGTGAATCTACCAACACCAAGTTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCTCGCCACTTCTGCAAGACTTGTCGGAGGTACTGGACCCGTGGCGGCGCGCTGAGGAATGTGCCTGTCGGAGGGGGATGCCGGAGGAACAAGAGGTCAAGCAAAGGAAGCAGCTCCAAGTCACCGGCAAGTTCAGATCGTCAAGCTGGGAGCACTAGTTCCACCAACTCCATTTCTTCTAACAGTAACTCCGCCGGCGACTTAATAGGACTCACCCCTCATGCGCCACCACTGAGATTTATGTCTCCCTTACAAGCTGATTTCGCTGCTGGTGGAGACATGGGGTTAACCTACGGCGTAAATTATAACGCAATTTCAGCACCAATGGGAGGAGTAGTCGGCGACTTAAATTTCCAAATAGGAAGTGCCTTAGGCGGAGGAGGAGGAAGTGGCAGCAGCGGCACAACCATGGCCGCCGGAAGCAGCAGCGGATCTATCTTATTCGCTCCAGGTTTGGACCAATGGCGGGTGCCACAAACACAGCAATTTCCTTTCTTGTCTGGATTGGAAGGTTCACCTGGATTGTACTCGTTCGAAGGTGGAGCTGCCGGGGGAGAGGTACCGGGATACAGCGGCATGATGAGTCTCTGGCCAAAGGCGACATCTACGACGGCTTCCGGGCTGATAACTCAGCTGACTTCAGTGAAAATGGAAGACAACAATCCGGAGACGATGAATTTGTCAAGCCAATTCATGGGAAGTGAGCAGTATTGGGGTACTGGCCATGGTGGTTCTTCTAGTTCTGCTTGGACTGATCTTTCTTGA 1065 0.5296 MVFTSIPPYLDPANWQQQQSNHHHTGTLAGGLSSQQHQHQQLLSPPQPHGAGGTGSIRPGSMADRARMANIPMPEAARKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSKGSSSKSPASSDRQAGSTSSTNSISSNSNSAGDLIGLTPHAPPLRFMSPLQADFAAGGDMGLTYGVNYNAISAPMGGVVGDLNFQIGSALGGGGGSGSSGTTMAAGSSSGSILFAPGLDQWRVPQTQQFPFLSGLEGSPGLYSFEGGAAGGEVPGYSGMMSLWPKATSTTASGLITQLTSVKMEDNNPETMNLSSQFMGSEQYWGTGHGGSSSSAWTDLS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0248 354 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Lele39g0248 354 MobiDBLite consensus disorder prediction 136 168 - -
Lele39g0248 354 MobiDBLite consensus disorder prediction 13 47 - -
Lele39g0248 354 MobiDBLite consensus disorder prediction 13 61 - -
Lele39g0248 354 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Lele39g0248 354 MobiDBLite consensus disorder prediction 122 169 - -
Lele39g0248 354 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Lele39g0248 354 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 161 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0248 Lele-ChrLele39 1670137 1671435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0248 1 343 C2C2-Dof Transcription Factor Family AT5G02460 40.849 1.19e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele39g0248 zf-Dof 6.5e-32 No_clan