Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1165 ATGGTTTTTACTTCAATCCCTCATTATCTTGATCCAGCCAACTGGCAACAACAGCAAAGTAATCATCACCATACAGGCACTCTCGCCGGCGGTTTGAGCTCTCAGCAGCATCAGCATCAGCAGCTTCTTTCTCCGCCGCCTCAGCCGCAGCCTCATGGAGCGGGAGGGACGGGTTCAATCAGGCCGGGTTCCATGGCTGATCGAGCTCGGATGGCGAACATACCCATGCCGGAGGCTGCTCGGAAATGTCCCAGGTGTGAATCTACCAACACCAAGTTTTGCTACTTTAACAACTACAGTCTCTCTCAGCCTCGCCACTTCTGCAAGACTTGTCGGAGGTACTGGACCCGTGGGGGCGCGCTGAGGAACGTACCTGTCGGAGGGGGATGCCGGAGGAACAAGAGATCAAGCAAAGGAAGCAGCTCCAAGTCACCGGCAAGTTCAGATCGTCAAGCTGGGAGCACTAGTTCCACCAACTCCGTTTCTTCTAACAGTAACTCTGCCGGCGACTTAATAGGACTCACCCCTCACGCGCCACCACTGAGATTTATGTCTCCCTTACAAGCTGATTTCGCTGCTGGTGGAGACATGGGGTTAACCTACGGCGTAAATTATAACGCAATTTCAGCACCAATGGGAGGAGTAGTCGGCGACTTAAATTTCCAAATAGGAAGTGCTTTAGGCGGAGGAGGAGGAAGTGGCAGCGGCACAACCACGGCCGCCGGAAGCAGCAGCGGGTCTATCTTATTCTCTCCAGGGTTGGACCAATGGCGGGTGCCACAAACACAGCAATTTCCTTTCTTGTCTGGACTGGAAGGTTCACCTGGATTGTACTCGTTCGAAGGTGGAGCTGCCGGGGGAGAGGGACAGGGATACAGCGGCATGATGAGTCTCTGGCCAAAGGCGACATCTACGACGGCTTCCGGGCTGATAACTCAGCTGGCTTCCGTGAAAATGGAAGACAACAATCGGGAGACGATGAATTTGTCAAGACAATTCATGGGAAGTGAGCAGTATTGGGGTACTGGCCATGGTGGTTCTTCTAGTTCTGCTTGGACTGATCTTTCTGGATTTAGCTCATCTTCAACTACTAGCAATCCACTATAG 1107 0.5276 MVFTSIPHYLDPANWQQQQSNHHHTGTLAGGLSSQQHQHQQLLSPPPQPQPHGAGGTGSIRPGSMADRARMANIPMPEAARKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSKGSSSKSPASSDRQAGSTSSTNSVSSNSNSAGDLIGLTPHAPPLRFMSPLQADFAAGGDMGLTYGVNYNAISAPMGGVVGDLNFQIGSALGGGGGSGSGTTTAAGSSSGSILFSPGLDQWRVPQTQQFPFLSGLEGSPGLYSFEGGAAGGEGQGYSGMMSLWPKATSTTASGLITQLASVKMEDNNRETMNLSRQFMGSEQYWGTGHGGSSSSAWTDLSGFSSSSTTSNPL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1165 368 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Lele37g1165 368 MobiDBLite consensus disorder prediction 125 172 - -
Lele37g1165 368 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677|GO:0006355
Lele37g1165 368 MobiDBLite consensus disorder prediction 139 171 - -
Lele37g1165 368 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 174 IPR045174 GO:0003700|GO:0006355
Lele37g1165 368 MobiDBLite consensus disorder prediction 16 64 - -
Lele37g1165 368 MobiDBLite consensus disorder prediction 16 43 - -
Lele37g1165 368 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1165 Lele-ChrLele37 21149100 21150445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1165 1 345 C2C2-Dof Transcription Factor Family AT5G02460 42.021 9.65e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele37g1165 zf-Dof 6.9e-32 No_clan