Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0330 ATGCAAGACCCCACGGCGTTCCAGCCGATGAAACCCCAATTTCCTGAACAAGAACAGCTTAAATGTCCACGTTGTGATTCTACCAACACTAAATTCTGCTACTATAACAACTATAATCTCTCCCAGCCTCGTCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGCGGTGCTCTGCGAAACATCCCAGTCGGTGGTGGAAGCAGGAAGAACATGAAGCGATCGTCGGCCACCAAACGCCCTTCTGCTGCTGCTTCTTCCACATCATCTCCTACTGCATCGGTTTCACCTGCGTCAACAGCTCGTCCGGATCCTGACCCGGCCCCGTTTTTTGCCAACCAGAGCGGTCCCATGAACATTGGTGGGAGCTTCAGTTCCCTTCTGGCATCAACTGTGCAGTGGGGTGGTTTATTGGAGGGTCTGAATTCAAATGGGTCTGGTTTGAGAATGATGCAACTGAATGAATTTAGGGAGAATGTAGGTTCTGGCCATGTGAAGAATTCGGATTCGGGTCGAAACCCAGGTCTGGAAAGGCAGAGCAACGGTAATTCGGAGAGCTTTCTGGGTAAGCAAAATGTTGATTCAAGCTGTTGGAATGGTAGTAGCAATGGGTGGTCTGATCTTGCAATATATACACCAGGCTCAAGCTATCAGTAG 660 0.4879 MQDPTAFQPMKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNMKRSSATKRPSAAASSTSSPTASVSPASTARPDPDPAPFFANQSGPMNIGGSFSSLLASTVQWGGLLEGLNSNGSGLRMMQLNEFRENVGSGHVKNSDSGRNPGLERQSNGNSESFLGKQNVDSSCWNGSSNGWSDLAIYTPGSSYQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0330 219 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Lele37g0330 219 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 185 IPR045174 GO:0003700|GO:0006355
Lele37g0330 219 MobiDBLite consensus disorder prediction 162 194 - -
Lele37g0330 219 MobiDBLite consensus disorder prediction 61 116 - -
Lele37g0330 219 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Lele37g0330 219 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Lele37g0330 219 MobiDBLite consensus disorder prediction 78 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0330 Lele-ChrLele37 2784210 2784869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0330 11 139 C2C2-Dof Transcription Factor Family AT1G51700 55.714 4.03e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele37g0330 zf-Dof 2.1e-33 No_clan