Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1204 ATGGATCCTTCTAGTGGACACCACCAGCAAATGCCTTCACTGGAGAATATGTTGGCTTGTTCAAAGGCACAGAATCAAGCAGAGAGAAAGCCAAGACCTCAGCCTGAACAAGCCCTGAAATGTCCAAGATGCGACTCTACCAACACCAAATTCTGTTACTACAACAATTACAGTCTCTCCCAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACTCTGAGGAATGTTCCAGTGGGTGGAGGTTGCAGGAAGAACAAAAGGTCTTCGTCATCTTCTTCATCGTCAAAAAGGGCTGAAGATCAATCACTCACAGCAAATTCTAATCCACTCATCACTACCTTCCCTCCGTTATCATATGACCCCAATGACCTCACTCTTGCACTAGCTAGACTCCAGAAGCAATCTTGCGGACATTTGGGCTTTGATAACCATGATTTTTCCGTCATGGGAAATTCTCTCGGAAACCTCACTTCCACAAACCCCGGATTTTTTGACGCTCTTCGTAGTGGTGGATTCCTCGAAACTCAGAGTAGTAATCTTCAGAATCTGTACTATGGATATGGAAATGTGGACTTGGGAGAGGTGGACAATTGCAGCAACAGTAATAATGCTTGTGGGATTACTGGAGAGATGATGCTTCCGTTTGATCAAGAAGTGAGTAATGCCACTACTCATGCCGTCACTGTCACTACCATGAAGCAAGAAATCTGCAATGGCAGAGAACAAGGTGATTCTAAGGTTTTGTGGGGTCTTCCATGGCAGCTTAATGGAGACACAAACATGGGTGAAATTGATTCAGAGAGGGAAAATTGGAACAGTCTCACGTCGTCATCTTGGCACGGGCTTCTTAATAGACCCCTAATGTAA 885 0.4475 MDPSSGHHQQMPSLENMLACSKAQNQAERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSKRAEDQSLTANSNPLITTFPPLSYDPNDLTLALARLQKQSCGHLGFDNHDFSVMGNSLGNLTSTNPGFFDALRSGGFLETQSSNLQNLYYGYGNVDLGEVDNCSNSNNACGITGEMMLPFDQEVSNATTHAVTVTTMKQEICNGREQGDSKVLWGLPWQLNGDTNMGEIDSERENWNSLTSSSWHGLLNRPLM 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1204 294 MobiDBLite consensus disorder prediction 1 40 - -
Lele30g1204 294 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 194 IPR045174 GO:0003700|GO:0006355
Lele30g1204 294 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Lele30g1204 294 MobiDBLite consensus disorder prediction 84 114 - -
Lele30g1204 294 MobiDBLite consensus disorder prediction 90 114 - -
Lele30g1204 294 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Lele30g1204 294 MobiDBLite consensus disorder prediction 1 31 - -
Lele30g1204 294 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1204 Lele-ChrLele30 14801662 14803085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1204 37 294 C2C2-Dof Transcription Factor Family AT2G28510 42.086 1.48e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele30g1204 zf-Dof 5.9e-34 No_clan