Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0966 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGAGTGGTTAAACCTATGGAATTAGGTTCAAATCCAAAGCCTGCAGGTATGTTGGAGAAAAAGGCAAGGCCTCAGAAAGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACCAACACCAAATTCTGTTACTACAATAACTATAGCCTGTCTCAGCCCAGATACTTTTGTAAGACTTGTCGAAGGTATTGGACTGAAGGTGGCTCTCTCAGGAATGTTCCTGTTGGTGGAGGTTCCAGAAAGAACAAGAGACCTTCTTCTTCTTCATCTTCTACTACTTCAACAACATCAGCACCAGCATCAAAGAAGCTTCCAGAACCTTCTCATCAGAACCCCAACAAGATCCACCAAGAACAAGATCTTAACCTGGCATACCCAACACCACCACCATCGATATCATCACTCCCTCCACAACAACAACCTGAGATTTCTGGAAGTTCTAATAATTCTTCGAGATGTTTGATGAATTCCTGGATGCCCATGTCGGTTGCATCAGATGCAAGCATGATGCATCATCATGGGTTTCCTTTGGAGTTCAAGCCTCAGCATCATCATCAAGGGCTCAATTTTAGCTTTGACGGGTTTGAGAATAATGGGTTAATCACAAGTGGTCTTCATCATCATCATCATCAGGGAATGCAATTGGGTAATTCTGCTATTGGTGGTGCTGGTGCAAGGACGATCTTGTTCCCTATTGAAGAAATGAAGCACGTGCCAAGCACTAGCACAAGTCATGAGTTAATTGATTCGCAAAATAATAGAGGAAGCAGCCATGGAGATCCAAGTGGGTTTTGGAATGGCATGTTAGGTGGAGGAGCATGGTAG 858 0.4406 MDTAQWAQGNIGVVKPMELGSNPKPAGMLEKKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPSSSSSSTTSTTSAPASKKLPEPSHQNPNKIHQEQDLNLAYPTPPPSISSLPPQQQPEISGSSNNSSRCLMNSWMPMSVASDASMMHHHGFPLEFKPQHHHQGLNFSFDGFENNGLITSGLHHHHHQGMQLGNSAIGGAGARTILFPIEEMKHVPSTSTSHELIDSQNNRGSSHGDPSGFWNGMLGGGAW 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0966 285 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Lele28g0966 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 205 IPR045174 GO:0003700|GO:0006355
Lele28g0966 285 MobiDBLite consensus disorder prediction 254 271 - -
Lele28g0966 285 MobiDBLite consensus disorder prediction 18 37 - -
Lele28g0966 285 MobiDBLite consensus disorder prediction 148 162 - -
Lele28g0966 285 MobiDBLite consensus disorder prediction 254 285 - -
Lele28g0966 285 Pfam Dof domain, zinc finger 38 95 IPR003851 GO:0003677|GO:0006355
Lele28g0966 285 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Lele28g0966 285 MobiDBLite consensus disorder prediction 92 139 - -
Lele28g0966 285 MobiDBLite consensus disorder prediction 79 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0966 Lele-ChrLele28 6325183 6326671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0966 1 285 C2C2-Dof Transcription Factor Family AT4G24060 38.177 1.21e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele28g0966 zf-Dof 1.4e-33 No_clan