Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0899 ATGTTGGGTTGTGAATTCTCTGCTGCTGCTTCTGGTTCCAATCCTAAGCCATTCCCCAGGTGGAAGCCCGACCATGTGGAGCCGCGTTCCCCTTGCCCTCGCTGTGCTTCTTCCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCCCAGCCCAGGTACTTGTGTAAATCTTGCCGTCGCTACTGGACCAAAGGCGGCTTCCTCCGCAACGTCCCCGTCCGCGGTGGTTCCCGTAAATCCCGCCGTACTAAGATCCCCCGGCTCCCACCACCAAACCACCGTCTTTCCACCGACCATGCTCCTAATAATAACTCCGGCAACGACTCTGACGCTGACACGTCCCGAGCCAAAGGGTCCGATATAGACATGGCCGTGGTCTTTGCTAATTACTTGAGCTCCGGTCATGATGATTCCAATACCCAGAACGACGCGCCTCAGCCGTCGGATCCAGTGGTAGAGGGAGAGGGGCTTCTTCCTCGGGATGAGTCGGTGATGAGTGGGATTGAGGTGGAGTGGGAGAGCTTGTTAGGTGGTGGTGATGGAGAAGTGGTCCAAGATGTTTTCTGCTTGTCGGATGCGACCACATCGTCCTCTTCGTCTGTCATATGGCAACCACCTCTGATGCAGTTGCAGGAGGAGTTGGACAATCACTTGCCCTTCAATCATGATGTCGATGAGGTTGCTCAACTGCCTATAGCCGATTCCTGGAATTGGAATTCCTTCGATTTTCCTACTTTGCAGGAATTCTCATCAAGCTAG 765 0.5333 MLGCEFSAAASGSNPKPFPRWKPDHVEPRSPCPRCASSNTKFCYYNNYSLSQPRYLCKSCRRYWTKGGFLRNVPVRGGSRKSRRTKIPRLPPPNHRLSTDHAPNNNSGNDSDADTSRAKGSDIDMAVVFANYLSSGHDDSNTQNDAPQPSDPVVEGEGLLPRDESVMSGIEVEWESLLGGGDGEVVQDVFCLSDATTSSSSSVIWQPPLMQLQEELDNHLPFNHDVDEVAQLPIADSWNWNSFDFPTLQEFSSS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0899 254 MobiDBLite consensus disorder prediction 98 114 - -
Lele28g0899 254 MobiDBLite consensus disorder prediction 1 24 - -
Lele28g0899 254 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Lele28g0899 254 MobiDBLite consensus disorder prediction 134 157 - -
Lele28g0899 254 MobiDBLite consensus disorder prediction 74 120 - -
Lele28g0899 254 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 148 IPR045174 GO:0003700|GO:0006355
Lele28g0899 254 MobiDBLite consensus disorder prediction 134 149 - -
Lele28g0899 254 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Lele28g0899 254 Pfam Dof domain, zinc finger 30 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0899 Lele-ChrLele28 5801154 5801918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0899 32 134 C2C2-Dof Transcription Factor Family AT1G21340 57.282 9.42e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele28g0899 zf-Dof 6.1e-30 No_clan