Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0607 ATGGATTCTCCTGATGTTACGAAGAAAACCCCCATTTCCATAGCCACTGCCGATGCTGCTGCTTCTTCTGAATCTCCTCCTGAGTCTCCTTTTTTCAGCTTTGTAAACAATTTATCTCCAATAAAGTCTGTCAAGGCTTCTCGTGTGGTTCAAGATTTCCTAGGACTAAATTCTCCCCCTGTCGTCTTCACGTCACCACGTATTAATCCCCATCTTGGATCCAAGTTCTTAGAGAGGCCTCAATGCTCTCAATCAGCCACTGTGGAAATTTCTCAAAGTGTCAATGGAGGCAAGAGACTTGCTGATAATCCTGTTGATTCTGACAAATCTACTTCTTTATCGCCGGGATTTATAACTGATAGCAAGAATTATTCAAATACTCAGCGCTGCTGCTCTTCACTGTGTGTAGAATCTATAGATGAATATTTAGCTGATCCTTTAGATATTGATCATACGTCTTCGGGGCATTCAGTCGACCCCGACGTGAAGCAATCCAATGAGAATGTTGGATCATCACTAAATGACTCAACTTACACAAAGAGAGCCATATCAGAAGTTGATGACAAAAATGGTCCTGATGACAAGATGAACGAACCTTTGCTTTTGTTAGAGGAATCCGAAGCCAGCTATCAAGAAAAGACAAGACTAGTTGATGAAGCAGGGAAAGTAGAAGGGGAGAAAGCTGTTGAATGGCCTTCTCAAGAATGTGCAAAGTTAGGGTTCATTGTGTCTGCTGACAATGTTTTTGATAAGCAACGTTCTGATGATTCAATTGTTCAGTGCACAGGAAATGAAATGCAGGATCGTCCTGATTGTACCTCTCAGTCGATGTTTGAGCCTTTGCTGGAAGTAAAAGAATGTGAAGATGGTGGCGAGATGGGGACAACCTCTTCTGTAAGTGTACAGAACATGTCACAGGACAGCACCAAGGCCAGCCAAAAGCACGGAGGCCTGCGTAGACGTTGCCTTCAGTTTGAGGAGGCCGCGTCAAGTGCTTTTAGAAATTTGAATAGCTCCCCGCTTCAAGCCCATGTTCCTGAAGATTTAATACCATCAGCTAACTCCTCAGATCCAAAAGATTTAGAAGCTTCTCATGTTGCACTGAATGACACTTCAGCTGAAAAGAGAATGGTCAATCAGTCCAAACCTATCACTACCACATTTTCTCCACAGTGCAGTGGAAGCTTCCCTGTGAAAGGTTCCAAGCCATCTGGTATCGGGTTGCACTTAAATAGCATTGTAAATGCTATGCCCCATGGCCGTGCTGCATTTACAGGTATGAGACTAGCAGAGGGTTGTACAGGTTTACAAGGCGGGAAGTCAGTTACTTTACTAAGCTGCCGCAATGCTGAGGACATAAACAGAGGCTTAATTTCATCAAACATGGACGAGCAACCATCAGTTGGAAATAAATGTGAGAGGTACGAAAGGAACGCTTCAATAACTGCGGATTCTCTCCCCTCTGGGTCTCCGAGCTCTATAGAACCTGCAAATTTGTCAATACACGTTGAGAATCCAGCAAGTGTCCAGGATGAGAGAAAATTAAGCTTTGTAGGTGATGGAAAATTTGAGGATTCCAATCAAACAAGCCCCACAAAGAAAAATTACTGTGATTGCTTTGCAGCCGGATTATTTTGTGCTGAGTCTTGTGCTTGCCAAGACTGCTATAATAGACCAGAAAATGGAGATTTGGTTCTCGAGACCAGGCAGCAAATAGAAACCCGTAACCCACTTGCATTTGCACCCAAGATTGTGCAGCATGTTACTGATTTTCCTTCAAATAATATGGACGATACCAATATAACGACACCATCATCGGCAAGACATAAAAGAGGCTGCAACTGCAAAAAGTCAATGTGTCTGAAAAAATATTATTACGTTCCCACTGAACATGCTTTGAGTGAAGAAAGGAGAGACAGAGCAGAAGAAGGATCAAATAGCACGGAGGCAAAGAAGACGGGCTTGTTGCATGGAGAGTTGTATGATCTGCACTGCCTTTCTCCTCTAACACCGTCTTTGCAATACTCAGACCAAGGAAAGCAAGCTGCAAATTTACGAGCTCCTTCTGGGAAATATCTTCCAGCCACAGAGATGATAAGAAATGCTTCTTACGATTGCCATCCAGATAGCAACAACATGGAAATAATGGATCAACCGTCACCAAGATGTAATTCAGTTGCCAAAGTAGGCCAGCTCACTATTTCTAATTCTCAGTTAATGTCTAGTGCTTCATTCTCAACTAAAACAAGGGATCAGACGCATATTCCACGAGTTCTATCCGGAAGTTCCCTTCGGTGGCGTAGTTCACCAATCACTCCGATGACTAAATTATGTGAAACTAAATCTCTACAGTGTCTTGAATCGGAGAGCAAACTTTATGACATTCTAGAAGATGAAACTCCTGAGATGTTGAAGGAAGCTTCAACTCCCATTAAGTCTGTGAAAACAAGTTCCCCTAAGCAGAAGCGAGTTTCTCCTCCTCACGGTCATTTACTTGAACTTGGTTCAAGCTCTTCAGGGGGCTTGAGAAGTGGCAGGAAGTTTATATTGAAAGCTGTACCTTCTTTCCCACCACTGACCCCATGCATTGTTTCGAAAGCCAGTGATCATGGGAATTCAGAGAACAGCAAGCAAGTGACGGACGAGACAGAAAGGGCTATCATCCGATCCGAAACAGAAAGGGGTATTTAA 2691 0.4318 MDSPDVTKKTPISIATADAAASSESPPESPFFSFVNNLSPIKSVKASRVVQDFLGLNSPPVVFTSPRINPHLGSKFLERPQCSQSATVEISQSVNGGKRLADNPVDSDKSTSLSPGFITDSKNYSNTQRCCSSLCVESIDEYLADPLDIDHTSSGHSVDPDVKQSNENVGSSLNDSTYTKRAISEVDDKNGPDDKMNEPLLLLEESEASYQEKTRLVDEAGKVEGEKAVEWPSQECAKLGFIVSADNVFDKQRSDDSIVQCTGNEMQDRPDCTSQSMFEPLLEVKECEDGGEMGTTSSVSVQNMSQDSTKASQKHGGLRRRCLQFEEAASSAFRNLNSSPLQAHVPEDLIPSANSSDPKDLEASHVALNDTSAEKRMVNQSKPITTTFSPQCSGSFPVKGSKPSGIGLHLNSIVNAMPHGRAAFTGMRLAEGCTGLQGGKSVTLLSCRNAEDINRGLISSNMDEQPSVGNKCERYERNASITADSLPSGSPSSIEPANLSIHVENPASVQDERKLSFVGDGKFEDSNQTSPTKKNYCDCFAAGLFCAESCACQDCYNRPENGDLVLETRQQIETRNPLAFAPKIVQHVTDFPSNNMDDTNITTPSSARHKRGCNCKKSMCLKKYYYVPTEHALSEERRDRAEEGSNSTEAKKTGLLHGELYDLHCLSPLTPSLQYSDQGKQAANLRAPSGKYLPATEMIRNASYDCHPDSNNMEIMDQPSPRCNSVAKVGQLTISNSQLMSSASFSTKTRDQTHIPRVLSGSSLRWRSSPITPMTKLCETKSLQCLESESKLYDILEDETPEMLKEASTPIKSVKTSSPKQKRVSPPHGHLLELGSSSSGGLRSGRKFILKAVPSFPPLTPCIVSKASDHGNSENSKQVTDETERAIIRSETERGI 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0607 896 MobiDBLite consensus disorder prediction 158 180 - -
Lele28g0607 896 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 533 558 IPR005172 -
Lele28g0607 896 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 17 624 IPR044522 GO:0003700
Lele28g0607 896 MobiDBLite consensus disorder prediction 861 896 - -
Lele28g0607 896 MobiDBLite consensus disorder prediction 1 29 - -
Lele28g0607 896 MobiDBLite consensus disorder prediction 803 842 - -
Lele28g0607 896 MobiDBLite consensus disorder prediction 88 118 - -
Lele28g0607 896 MobiDBLite consensus disorder prediction 875 896 - -
Lele28g0607 896 MobiDBLite consensus disorder prediction 289 318 - -
Lele28g0607 896 MobiDBLite consensus disorder prediction 293 312 - -
Lele28g0607 896 ProSiteProfiles CRC domain profile. 526 650 IPR005172 -
Lele28g0607 896 MobiDBLite consensus disorder prediction 151 180 - -
Lele28g0607 896 SMART CXC_2 527 561 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0607 Lele-ChrLele28 3897165 3902112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0607 798 861 CPP Transcription Factor Family AT4G14770 47.059 2.45e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lele28g0607 TCR 1.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0611 25 3873186 3877965 Lele28g0607 28 3897165 3902112 hybridization
Lele26g0623 26 3981098 3986057 Lele28g0607 28 3897165 3902112 hybridization