Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0294 ATGCCGCATCAGAAGCCCATCTTGCGAAGCTCTTTCCTTTTCTTACTTTTACAGGTCTTAATCAAAGTAGCTCTCGTGAGCTCCAAATCTACAATCGAGCCTTGCTCAAACTCTGACTCCTGCAATGCCCTCCTCGGCTACACTGTTTACACTGACCTAAAGGTCTCTGAGGTGGCTTCCCTCTTTCAAATCGACCCCATTGCTATTCTCACCGCCAATGCCATCGACATTTCATACCCTGACGTAGAGCACCACATTCTTCCCTCCCAACTCTTCCTCAAAATCCCCATTAACTGTTCGTGCGTTGACGGGATTCGTAAATCAGTGTCAACCCATTACAGAACACGGCCCTCTGATACTCTTTCGTCGATTGCAGACTCTATATATGGTGGTCTGGTGTCTGCTGCCCAGCTCAGGGAGGCGAACTCCATAACCGACCCTTCAGTGTTGGATGTGGGTCAGAACCTTGTGGTGCCTCTTCCATGCACTTGCTTCAATGGGACCGATAACTCTTTGCCTGCAATTTACCTGTCGTACGTGGTGCAGCCCATCGAAACTTTGGCTGCGATTGCTGCCAGGTATTCCACCACTCTTACTGATTTGATGGATGCTAACGCCTTGGGGGGTACGGCTATCAGCGATGGCGATATTCTTGCTATTCCTATCCCGGCTTGCGCATCAAATTTTCCAAATTATTCCGCTGATTATGGTTTGCTCGTCCCCAGTGGAAGTTATGCGATTACAGCGAGCCACTGTATGCAGTGTAGTTGTGGACCACAAAATCTAAATTTGTACTGTATGCCTGCTTCTCTGGCCGTTTCCTGTTCTAGCATGCAATGTAAAAACAGCAACCTTATGGTTGGGAATGTTACAGCACAACAAAGTAGTGCTGGCTGCAATGTTACTTCTTGTAGTTACGATGGTTTTGTTAATGGCACAATAGTAACAACGTTGTCCACTTCTCTTCAGCCTCGATGCCCAGTGCCGCAGAAATTTCCCCGACTGGTAGCGCCACCTACAACTGTTACCAGGATTGCAGAATTTGCACCATCACCATCGCCTCTGTCACATTCAGGTGGTCCAATGAACCCCAAATCATCGGCGGTGCCTTCGATCGGGTCACTTCCCGGATTCACCCCTGCAAATGGGCCTGCTAGTGGCCTGTCGTCTGGTGCTTCTGCTGCAAGCTCCTTTATGAATCCTATACCCACTTTGACATCTGCGCTTGTGTTATTGTTTGTCGAGTTGTTGATCTCTGTAGCATAG 1266 0.485 MPHQKPILRSSFLFLLLQVLIKVALVSSKSTIEPCSNSDSCNALLGYTVYTDLKVSEVASLFQIDPIAILTANAIDISYPDVEHHILPSQLFLKIPINCSCVDGIRKSVSTHYRTRPSDTLSSIADSIYGGLVSAAQLREANSITDPSVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVQPIETLAAIAARYSTTLTDLMDANALGGTAISDGDILAIPIPACASNFPNYSADYGLLVPSGSYAITASHCMQCSCGPQNLNLYCMPASLAVSCSSMQCKNSNLMVGNVTAQQSSAGCNVTSCSYDGFVNGTIVTTLSTSLQPRCPVPQKFPRLVAPPTTVTRIAEFAPSPSPLSHSGGPMNPKSSAVPSIGSLPGFTPANGPASGLSSGASAASSFMNPIPTLTSALVLLFVELLISVA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0294 421 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 330 - -
Lele28g0294 421 MobiDBLite consensus disorder prediction 349 374 - -
Lele28g0294 421 MobiDBLite consensus disorder prediction 356 373 - -
Lele28g0294 421 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Lele28g0294 421 SUPERFAMILY LysM domain 111 160 IPR036779 -
Lele28g0294 421 Gene3D LysM domain 169 229 IPR036779 -
Lele28g0294 421 SUPERFAMILY LysM domain 177 222 IPR036779 -
Lele28g0294 421 SMART LysM_2 112 159 IPR018392 -
Lele28g0294 421 SMART LysM_2 178 221 IPR018392 -
Lele28g0294 421 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Lele28g0294 421 Gene3D LysM domain 105 168 IPR036779 -
Lele28g0294 421 Pfam LysM domain 113 159 IPR018392 -
Lele28g0294 421 Pfam LysM domain 179 221 IPR018392 -
Lele28g0294 421 CDD LysM 178 220 IPR018392 -
Lele28g0294 421 CDD LysM 111 158 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0294 Lele-ChrLele28 1740437 1742955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0294 4 421 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 63.810 0.0 536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0279 25 1664954 1667463 Lele28g0294 28 1740437 1742955 hybridization
Lele26g0289 26 1714129 1716647 Lele28g0294 28 1740437 1742955 hybridization