Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1809 ATGGAGTGCATATATGAAGACAAGTACGAAGGGAAGTGGTTTGATGATTGCAAATGCAAGAAGACGAAGCATTGTCTCATTCCTGGCGGGGGGCTCAGCGGCTGTATTCTGGTAGTAAAAGCTACGGCCAGAATGCAGCATCAGAAGCCCATTTTGCGTAGCTCTTTCCTTTTCTTACTTTTTCAGGTCTTAATCAAAGTAGCTCACGTGAGCTCCAAATCTACAATCGAGCCTTGCGCAAACTCCGACTCCTGTAATGCCCTTCTCGGCTACACTGTTTACACTGACCTAAAGGTCTCTGAGGTGGCTTCCCTCTTTCAAATCGACCCCATTGCTCTTCTCACCGCCAATGCCATTGACATTTCGTACCCTGACGTAGAGCACCACATTCTTCCCTCCCAACTCTTCCTTAAAATCCCCATTAACTGTTCGTGCGTTGACGGAATTCGTAAATCGGTGTCGACGCATTACAGAACTCGGACCTCTGATACTCTTTCATCGATTGCAGACTCTATATATGGCGGTCTGGTGTCTGCTGACCAGCTCAGGGAAGCGAACTCCATAACCGACCCTTCCGTACTGGATGTAGGTCAGAGCCTTGTGGTGCCTCTTCCATGCACTTGCTTCAATGGGACCGATAACTCTTTGCCTGCAATTTACCTGTCTTACGTGGTGCAGCCCATCGACACTTTGGCTGCGATTGCTGCCAGGTATTCCACCACTCTTAATGATTTGATGGATGTTAACGCCTTGGGGGGTACGGCTATCAGCGATGGCGATATTCTTGCTATTCCTATCCCGGCTTGCGCATCAGATTTTCCAAATTATTCCACTGATTATGGTTTGCTCGTCCCCAATGGAAGTTATGCGATTACAGCGAGCCACTGTATGCAGTGTAGTTGCGGACCACAAAATCTAAATTTGTACTGTATGCCTGCTTCTCTGGCCGTTTCTTGTTCTAGCATGCAATGTAAAAACAGCAACCTTATGGTTGGGAATGTTACTGCGCAACAAAGTAGTGCTGGCTGCAATGTTACTTCTTGTATTTATGATGGTTTTGTTAATGGCACAATAGTAACAACGTTGTCCACTTCTCTTCAGCCTCGATGCCCAGGGCCGCAGAAATTTCCCCCACTGGTAGCGCCGCCTACTACTGTTACCAGGATTGCAGAATTTGCACCATCACCATCACCTCTGGCACATTCAGGTGGTCCAATGAACCCCAAATCATCAGTGGTGCCTTCGACCGGGTCACTTCCTGGATTCACCCCTGCAAATGGGCCGGCCAGTGGCCTGTTGTCTGGTGCTTCTGCCGCACGCTCCTTGATGAATCCTATACCCACTTTGACATCTGCGCTTGTGGTATTGTTTGTCAAGTTGTTGATCTCTGTAGCATATTAA 1401 0.4804 MECIYEDKYEGKWFDDCKCKKTKHCLIPGGGLSGCILVVKATARMQHQKPILRSSFLFLLFQVLIKVAHVSSKSTIEPCANSDSCNALLGYTVYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSQLFLKIPINCSCVDGIRKSVSTHYRTRTSDTLSSIADSIYGGLVSADQLREANSITDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAAIAARYSTTLNDLMDVNALGGTAISDGDILAIPIPACASDFPNYSTDYGLLVPNGSYAITASHCMQCSCGPQNLNLYCMPASLAVSCSSMQCKNSNLMVGNVTAQQSSAGCNVTSCIYDGFVNGTIVTTLSTSLQPRCPGPQKFPPLVAPPTTVTRIAEFAPSPSPLAHSGGPMNPKSSVVPSTGSLPGFTPANGPASGLLSGASAARSLMNPIPTLTSALVVLFVKLLISVAY 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1809 466 MobiDBLite consensus disorder prediction 397 420 - -
Lele27g1809 466 Gene3D LysM domain 211 273 IPR036779 -
Lele27g1809 466 Gene3D LysM domain 149 210 IPR036779 -
Lele27g1809 466 ProSiteProfiles LysM domain profile. 155 202 IPR018392 -
Lele27g1809 466 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 54 374 - -
Lele27g1809 466 SUPERFAMILY LysM domain 221 266 IPR036779 -
Lele27g1809 466 SMART LysM_2 222 265 IPR018392 -
Lele27g1809 466 SMART LysM_2 156 203 IPR018392 -
Lele27g1809 466 Pfam LysM domain 157 203 IPR018392 -
Lele27g1809 466 Pfam LysM domain 223 265 IPR018392 -
Lele27g1809 466 CDD LysM 155 202 IPR018392 -
Lele27g1809 466 ProSiteProfiles LysM domain profile. 221 264 IPR018392 -
Lele27g1809 466 CDD LysM 222 264 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1809 Lele-ChrLele27 23072975 23078233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1809 48 465 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 65.094 0.0 543
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0279 25 1664954 1667463 Lele27g1809 27 23072975 23078233 hybridization
Lele26g0289 26 1714129 1716647 Lele27g1809 27 23072975 23078233 hybridization